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TSPAN16 (tetraspanin 16)

Identity

Alias_namesTM4SF16
transmembrane 4 superfamily member 16
Alias_symbol (synonym)TM4-B
TM-8
Other alias
HGNC (Hugo) TSPAN16
LocusID (NCBI) 26526
Atlas_Id 75233
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 11296139 and ends at 11315969 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TSPAN16 (19p13.2) / AHNAK (11q12.3)TSPAN16 (19p13.2) / EP300 (22q13.2)TSPAN16 (19p13.2) / HADH (4q25)
TSPAN16 (19p13.2) / TSPAN16 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPAN16   30725
Cards
Entrez_Gene (NCBI)TSPAN16  26526  tetraspanin 16
AliasesTM-8; TM4-B; TM4SF16
GeneCards (Weizmann)TSPAN16
Ensembl hg19 (Hinxton)ENSG00000130167 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130167 [Gene_View]  chr19:11296139-11315969 [Contig_View]  TSPAN16 [Vega]
ICGC DataPortalENSG00000130167
TCGA cBioPortalTSPAN16
AceView (NCBI)TSPAN16
Genatlas (Paris)TSPAN16
WikiGenes26526
SOURCE (Princeton)TSPAN16
Genetics Home Reference (NIH)TSPAN16
Genomic and cartography
GoldenPath hg38 (UCSC)TSPAN16  -     chr19:11296139-11315969 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPAN16  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblTSPAN16 - 19p13.2 [CytoView hg19]  TSPAN16 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBITSPAN16 [Mapview hg19]  TSPAN16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI688554 AW169944 BC029908 BM560276 DB457828
RefSeq transcript (Entrez)NM_001282509 NM_001282510 NM_012466
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPAN16
Cluster EST : UnigeneHs.579784 [ NCBI ]
CGAP (NCI)Hs.579784
Alternative Splicing GalleryENSG00000130167
Gene ExpressionTSPAN16 [ NCBI-GEO ]   TSPAN16 [ EBI - ARRAY_EXPRESS ]   TSPAN16 [ SEEK ]   TSPAN16 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26526
GTEX Portal (Tissue expression)TSPAN16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKR8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKR8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKR8
Splice isoforms : SwissVarQ9UKR8
PhosPhoSitePlusQ9UKR8
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_EC2   
Domain families : Pfam (Sanger)Tetraspannin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN16
DMDM Disease mutations26526
Blocks (Seattle)TSPAN16
SuperfamilyQ9UKR8
Human Protein AtlasENSG00000130167
Peptide AtlasQ9UKR8
HPRD18197
IPIIPI00007734   IPI00797176   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKR8
IntAct (EBI)Q9UKR8
FunCoupENSG00000130167
BioGRIDTSPAN16
STRING (EMBL)TSPAN16
ZODIACTSPAN16
Ontologies - Pathways
QuickGOQ9UKR8
Ontology : AmiGOintegral component of plasma membrane  cell surface receptor signaling pathway  integral component of membrane  
Ontology : EGO-EBIintegral component of plasma membrane  cell surface receptor signaling pathway  integral component of membrane  
NDEx NetworkTSPAN16
Atlas of Cancer Signalling NetworkTSPAN16
Wikipedia pathwaysTSPAN16
Orthology - Evolution
OrthoDB26526
GeneTree (enSembl)ENSG00000130167
Phylogenetic Trees/Animal Genes : TreeFamTSPAN16
HOVERGENQ9UKR8
HOGENOMQ9UKR8
Homologs : HomoloGeneTSPAN16
Homology/Alignments : Family Browser (UCSC)TSPAN16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN16
dbVarTSPAN16
ClinVarTSPAN16
1000_GenomesTSPAN16 
Exome Variant ServerTSPAN16
ExAC (Exome Aggregation Consortium)TSPAN16 (select the gene name)
Genetic variants : HAPMAP26526
Genomic Variants (DGV)TSPAN16 [DGVbeta]
DECIPHERTSPAN16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPAN16 
Mutations
ICGC Data PortalTSPAN16 
TCGA Data PortalTSPAN16 
Broad Tumor PortalTSPAN16
OASIS PortalTSPAN16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPAN16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPAN16
DgiDB (Drug Gene Interaction Database)TSPAN16
DoCM (Curated mutations)TSPAN16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN16 (select a term)
intoGenTSPAN16
Cancer3DTSPAN16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTSPAN16
Genetic Testing Registry TSPAN16
NextProtQ9UKR8 [Medical]
TSGene26526
GENETestsTSPAN16
Target ValidationTSPAN16
Huge Navigator TSPAN16 [HugePedia]
snp3D : Map Gene to Disease26526
BioCentury BCIQTSPAN16
ClinGenTSPAN16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26526
Chemical/Pharm GKB GenePA134989909
Clinical trialTSPAN16
Miscellaneous
canSAR (ICR)TSPAN16 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPAN16
EVEXTSPAN16
GoPubMedTSPAN16
iHOPTSPAN16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:47:21 CEST 2017

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