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TSPAN16 (tetraspanin 16)

Identity

Alias (NCBI)TM-8
TM4-B
TM4SF16
HGNC (Hugo) TSPAN16
HGNC Alias symbTM4-B
TM-8
HGNC Previous nameTM4SF16
HGNC Previous nametransmembrane 4 superfamily member 16
LocusID (NCBI) 26526
Atlas_Id 75233
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 11296160 and ends at 11326996 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TSPAN16 (19p13.2) / AHNAK (11q12.3)TSPAN16 (19p13.2) / EP300 (22q13.2)TSPAN16 (19p13.2) / HADH (4q25)
TSPAN16 (19p13.2) / TSPAN16 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSPAN16   30725
Cards
Entrez_Gene (NCBI)TSPAN16    tetraspanin 16
AliasesTM-8; TM4-B; TM4SF16
GeneCards (Weizmann)TSPAN16
Ensembl hg19 (Hinxton)ENSG00000130167 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130167 [Gene_View]  ENSG00000130167 [Sequence]  chr19:11296160-11326996 [Contig_View]  TSPAN16 [Vega]
ICGC DataPortalENSG00000130167
TCGA cBioPortalTSPAN16
AceView (NCBI)TSPAN16
Genatlas (Paris)TSPAN16
SOURCE (Princeton)TSPAN16
Genetics Home Reference (NIH)TSPAN16
Genomic and cartography
GoldenPath hg38 (UCSC)TSPAN16  -     chr19:11296160-11326996 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPAN16  -     19p13.2   [Description]    (hg19-Feb_2009)
GoldenPathTSPAN16 - 19p13.2 [CytoView hg19]  TSPAN16 - 19p13.2 [CytoView hg38]
ImmunoBaseENSG00000130167
Genome Data Viewer NCBITSPAN16 [Mapview hg19]  
OMIM617580   
Gene and transcription
Genbank (Entrez)AI688554 AW169944 BC029908 BM560276 DB457828
RefSeq transcript (Entrez)NM_001282509 NM_001282510 NM_012466
Consensus coding sequences : CCDS (NCBI)TSPAN16
Gene ExpressionTSPAN16 [ NCBI-GEO ]   TSPAN16 [ EBI - ARRAY_EXPRESS ]   TSPAN16 [ SEEK ]   TSPAN16 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN16 [ Firebrowse - Broad ]
GenevisibleExpression of TSPAN16 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26526
GTEX Portal (Tissue expression)TSPAN16
Human Protein AtlasENSG00000130167-TSPAN16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKR8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKR8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKR8
PhosPhoSitePlusQ9UKR8
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_EC2_sf   
Domain families : Pfam (Sanger)Tetraspanin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN16
SuperfamilyQ9UKR8
AlphaFold pdb e-kbQ9UKR8   
Human Protein Atlas [tissue]ENSG00000130167-TSPAN16 [tissue]
HPRD18197
Protein Interaction databases
DIP (DOE-UCLA)Q9UKR8
IntAct (EBI)Q9UKR8
BioGRIDTSPAN16
STRING (EMBL)TSPAN16
ZODIACTSPAN16
Ontologies - Pathways
QuickGOQ9UKR8
Ontology : AmiGOintegral component of plasma membrane  integral component of membrane  
Ontology : EGO-EBIintegral component of plasma membrane  integral component of membrane  
NDEx NetworkTSPAN16
Atlas of Cancer Signalling NetworkTSPAN16
Wikipedia pathwaysTSPAN16
Orthology - Evolution
OrthoDB26526
GeneTree (enSembl)ENSG00000130167
Phylogenetic Trees/Animal Genes : TreeFamTSPAN16
Homologs : HomoloGeneTSPAN16
Homology/Alignments : Family Browser (UCSC)TSPAN16
Gene fusions - Rearrangements
Fusion : QuiverTSPAN16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN16
dbVarTSPAN16
ClinVarTSPAN16
MonarchTSPAN16
1000_GenomesTSPAN16 
Exome Variant ServerTSPAN16
GNOMAD BrowserENSG00000130167
Varsome BrowserTSPAN16
ACMGTSPAN16 variants
VarityQ9UKR8
Genomic Variants (DGV)TSPAN16 [DGVbeta]
DECIPHERTSPAN16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPAN16 
Mutations
ICGC Data PortalTSPAN16 
TCGA Data PortalTSPAN16 
Broad Tumor PortalTSPAN16
OASIS PortalTSPAN16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN16  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSPAN16
Mutations and Diseases : HGMDTSPAN16
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSPAN16
DgiDB (Drug Gene Interaction Database)TSPAN16
DoCM (Curated mutations)TSPAN16
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN16
Cancer3DTSPAN16
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617580   
Orphanet
DisGeNETTSPAN16
MedgenTSPAN16
Genetic Testing Registry TSPAN16
NextProtQ9UKR8 [Medical]
GENETestsTSPAN16
Target ValidationTSPAN16
Huge Navigator TSPAN16 [HugePedia]
ClinGenTSPAN16
Clinical trials, drugs, therapy
MyCancerGenomeTSPAN16
Protein Interactions : CTDTSPAN16
Pharm GKB GenePA134989909
PharosQ9UKR8
Clinical trialTSPAN16
Miscellaneous
canSAR (ICR)TSPAN16
HarmonizomeTSPAN16
DataMed IndexTSPAN16
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSPAN16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:08 CEST 2021

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