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TSPAN17 (tetraspanin 17)

Identity

Alias (NCBI)FBX23
FBXO23
TM4SF17
HGNC (Hugo) TSPAN17
HGNC Alias symbFBX23
HGNC Previous nameFBXO23
 TM4SF17
HGNC Previous nameF-box only protein 23, transmembrane 4 superfamily member 17
LocusID (NCBI) 26262
Atlas_Id 75234
Location 5q35.2  [Link to chromosome band 5q35]
Location_base_pair Starts at 176647484 and ends at 176659051 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TSPAN17 (5q35.2) / WDR54 (2p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSPAN17   13594
Cards
Entrez_Gene (NCBI)TSPAN17    tetraspanin 17
AliasesFBX23; FBXO23; TM4SF17
GeneCards (Weizmann)TSPAN17
Ensembl hg19 (Hinxton)ENSG00000048140 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000048140 [Gene_View]  ENSG00000048140 [Sequence]  chr5:176647484-176659051 [Contig_View]  TSPAN17 [Vega]
ICGC DataPortalENSG00000048140
TCGA cBioPortalTSPAN17
AceView (NCBI)TSPAN17
Genatlas (Paris)TSPAN17
SOURCE (Princeton)TSPAN17
Genetics Home Reference (NIH)TSPAN17
Genomic and cartography
GoldenPath hg38 (UCSC)TSPAN17  -     chr5:176647484-176659051 +  5q35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPAN17  -     5q35.2   [Description]    (hg19-Feb_2009)
GoldenPathTSPAN17 - 5q35.2 [CytoView hg19]  TSPAN17 - 5q35.2 [CytoView hg38]
ImmunoBaseENSG00000048140
Genome Data Viewer NCBITSPAN17 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF174603 AK024427 AY037146 BC010405 BC067105
RefSeq transcript (Entrez)NM_001006616 NM_001366491 NM_001366492 NM_012171 NM_130465
Consensus coding sequences : CCDS (NCBI)TSPAN17
Gene ExpressionTSPAN17 [ NCBI-GEO ]   TSPAN17 [ EBI - ARRAY_EXPRESS ]   TSPAN17 [ SEEK ]   TSPAN17 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN17 [ Firebrowse - Broad ]
GenevisibleExpression of TSPAN17 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26262
GTEX Portal (Tissue expression)TSPAN17
Human Protein AtlasENSG00000048140-TSPAN17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FV3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FV3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FV3
PhosPhoSitePlusQ96FV3
Domaine pattern : Prosite (Expaxy)TM4_1 (PS00421)   
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_CS    Tetraspanin_EC2_sf   
Domain families : Pfam (Sanger)Tetraspanin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN17
SuperfamilyQ96FV3
AlphaFold pdb e-kbQ96FV3   
Human Protein Atlas [tissue]ENSG00000048140-TSPAN17 [tissue]
HPRD18198
Protein Interaction databases
DIP (DOE-UCLA)Q96FV3
IntAct (EBI)Q96FV3
BioGRIDTSPAN17
STRING (EMBL)TSPAN17
ZODIACTSPAN17
Ontologies - Pathways
QuickGOQ96FV3
Ontology : AmiGOubiquitin ligase complex  ubiquitin-protein transferase activity  integral component of plasma membrane  protein ubiquitination  enzyme binding  protein maturation  establishment of protein localization to organelle  protein localization to plasma membrane  
Ontology : EGO-EBIubiquitin ligase complex  ubiquitin-protein transferase activity  integral component of plasma membrane  protein ubiquitination  enzyme binding  protein maturation  establishment of protein localization to organelle  protein localization to plasma membrane  
NDEx NetworkTSPAN17
Atlas of Cancer Signalling NetworkTSPAN17
Wikipedia pathwaysTSPAN17
Orthology - Evolution
OrthoDB26262
GeneTree (enSembl)ENSG00000048140
Phylogenetic Trees/Animal Genes : TreeFamTSPAN17
Homologs : HomoloGeneTSPAN17
Homology/Alignments : Family Browser (UCSC)TSPAN17
Gene fusions - Rearrangements
Fusion : QuiverTSPAN17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN17
dbVarTSPAN17
ClinVarTSPAN17
MonarchTSPAN17
1000_GenomesTSPAN17 
Exome Variant ServerTSPAN17
GNOMAD BrowserENSG00000048140
Varsome BrowserTSPAN17
ACMGTSPAN17 variants
VarityQ96FV3
Genomic Variants (DGV)TSPAN17 [DGVbeta]
DECIPHERTSPAN17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPAN17 
Mutations
ICGC Data PortalTSPAN17 
TCGA Data PortalTSPAN17 
Broad Tumor PortalTSPAN17
OASIS PortalTSPAN17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN17  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSPAN17
Mutations and Diseases : HGMDTSPAN17
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSPAN17
DgiDB (Drug Gene Interaction Database)TSPAN17
DoCM (Curated mutations)TSPAN17
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN17
Cancer3DTSPAN17
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTSPAN17
MedgenTSPAN17
Genetic Testing Registry TSPAN17
NextProtQ96FV3 [Medical]
GENETestsTSPAN17
Target ValidationTSPAN17
Huge Navigator TSPAN17 [HugePedia]
ClinGenTSPAN17
Clinical trials, drugs, therapy
MyCancerGenomeTSPAN17
Protein Interactions : CTDTSPAN17
Pharm GKB GenePA128394740
PharosQ96FV3
Clinical trialTSPAN17
Miscellaneous
canSAR (ICR)TSPAN17
HarmonizomeTSPAN17
DataMed IndexTSPAN17
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSPAN17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:08 CEST 2021

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