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TSPAN17 (tetraspanin 17)

Identity

Alias_namesFBXO23
TM4SF17
F-box only protein 23, transmembrane 4 superfamily member 17
Alias_symbol (synonym)FBX23
Other alias
HGNC (Hugo) TSPAN17
LocusID (NCBI) 26262
Atlas_Id 75234
Location 5q35.2  [Link to chromosome band 5q35]
Location_base_pair Starts at 176647387 and ends at 176659058 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TSPAN17 (5q35.2) / WDR54 (2p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPAN17   13594
Cards
Entrez_Gene (NCBI)TSPAN17  26262  tetraspanin 17
AliasesFBX23; FBXO23; TM4SF17
GeneCards (Weizmann)TSPAN17
Ensembl hg19 (Hinxton)ENSG00000048140 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000048140 [Gene_View]  chr5:176647387-176659058 [Contig_View]  TSPAN17 [Vega]
ICGC DataPortalENSG00000048140
TCGA cBioPortalTSPAN17
AceView (NCBI)TSPAN17
Genatlas (Paris)TSPAN17
WikiGenes26262
SOURCE (Princeton)TSPAN17
Genetics Home Reference (NIH)TSPAN17
Genomic and cartography
GoldenPath hg38 (UCSC)TSPAN17  -     chr5:176647387-176659058 +  5q35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPAN17  -     5q35.2   [Description]    (hg19-Feb_2009)
EnsemblTSPAN17 - 5q35.2 [CytoView hg19]  TSPAN17 - 5q35.2 [CytoView hg38]
Mapping of homologs : NCBITSPAN17 [Mapview hg19]  TSPAN17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF174603 AK024427 AY037146 BC010405 BC067105
RefSeq transcript (Entrez)NM_001006616 NM_012171 NM_130465
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPAN17
Cluster EST : UnigeneHs.532129 [ NCBI ]
CGAP (NCI)Hs.532129
Alternative Splicing GalleryENSG00000048140
Gene ExpressionTSPAN17 [ NCBI-GEO ]   TSPAN17 [ EBI - ARRAY_EXPRESS ]   TSPAN17 [ SEEK ]   TSPAN17 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26262
GTEX Portal (Tissue expression)TSPAN17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FV3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FV3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FV3
Splice isoforms : SwissVarQ96FV3
PhosPhoSitePlusQ96FV3
Domaine pattern : Prosite (Expaxy)TM4_1 (PS00421)   
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_CS    Tetraspanin_EC2   
Domain families : Pfam (Sanger)Tetraspannin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN17
DMDM Disease mutations26262
Blocks (Seattle)TSPAN17
SuperfamilyQ96FV3
Human Protein AtlasENSG00000048140
Peptide AtlasQ96FV3
HPRD18198
IPIIPI00455345   IPI00641615   IPI00478177   IPI00025498   IPI00478931   IPI00964319   IPI00965275   IPI00969194   IPI00964092   
Protein Interaction databases
DIP (DOE-UCLA)Q96FV3
IntAct (EBI)Q96FV3
FunCoupENSG00000048140
BioGRIDTSPAN17
STRING (EMBL)TSPAN17
ZODIACTSPAN17
Ontologies - Pathways
QuickGOQ96FV3
Ontology : AmiGOubiquitin ligase complex  ubiquitin-protein transferase activity  integral component of plasma membrane  cell surface receptor signaling pathway  protein ubiquitination  enzyme binding  establishment of protein localization to organelle  
Ontology : EGO-EBIubiquitin ligase complex  ubiquitin-protein transferase activity  integral component of plasma membrane  cell surface receptor signaling pathway  protein ubiquitination  enzyme binding  establishment of protein localization to organelle  
NDEx NetworkTSPAN17
Atlas of Cancer Signalling NetworkTSPAN17
Wikipedia pathwaysTSPAN17
Orthology - Evolution
OrthoDB26262
GeneTree (enSembl)ENSG00000048140
Phylogenetic Trees/Animal Genes : TreeFamTSPAN17
HOVERGENQ96FV3
HOGENOMQ96FV3
Homologs : HomoloGeneTSPAN17
Homology/Alignments : Family Browser (UCSC)TSPAN17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN17
dbVarTSPAN17
ClinVarTSPAN17
1000_GenomesTSPAN17 
Exome Variant ServerTSPAN17
ExAC (Exome Aggregation Consortium)TSPAN17 (select the gene name)
Genetic variants : HAPMAP26262
Genomic Variants (DGV)TSPAN17 [DGVbeta]
DECIPHERTSPAN17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPAN17 
Mutations
ICGC Data PortalTSPAN17 
TCGA Data PortalTSPAN17 
Broad Tumor PortalTSPAN17
OASIS PortalTSPAN17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPAN17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPAN17
DgiDB (Drug Gene Interaction Database)TSPAN17
DoCM (Curated mutations)TSPAN17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN17 (select a term)
intoGenTSPAN17
Cancer3DTSPAN17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTSPAN17
Genetic Testing Registry TSPAN17
NextProtQ96FV3 [Medical]
TSGene26262
GENETestsTSPAN17
Target ValidationTSPAN17
Huge Navigator TSPAN17 [HugePedia]
snp3D : Map Gene to Disease26262
BioCentury BCIQTSPAN17
ClinGenTSPAN17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26262
Chemical/Pharm GKB GenePA128394740
Clinical trialTSPAN17
Miscellaneous
canSAR (ICR)TSPAN17 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPAN17
EVEXTSPAN17
GoPubMedTSPAN17
iHOPTSPAN17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:43 CEST 2017

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