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TSPAN18 (tetraspanin 18)

Identity

Alias_symbol (synonym)TSPAN
Other alias
HGNC (Hugo) TSPAN18
LocusID (NCBI) 90139
Atlas_Id 75235
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 44764426 and ends at 44932426 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATG13 (11p11.2) / TSPAN18 (11p11.2)CAMK1D (10p13) / TSPAN18 (11p11.2)DDX6 (11q23.3) / TSPAN18 (11p11.2)
TSPAN18 (11p11.2) / TMEM151B (6p21.1)TSPAN18 (11p11.2) / TSPAN18 (11p11.2)CAMK1D TSPAN18
ATG13 TSPAN18DDX6 TSPAN18

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPAN18   20660
Cards
Entrez_Gene (NCBI)TSPAN18  90139  tetraspanin 18
AliasesTSPAN
GeneCards (Weizmann)TSPAN18
Ensembl hg19 (Hinxton)ENSG00000157570 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157570 [Gene_View]  chr11:44764426-44932426 [Contig_View]  TSPAN18 [Vega]
ICGC DataPortalENSG00000157570
TCGA cBioPortalTSPAN18
AceView (NCBI)TSPAN18
Genatlas (Paris)TSPAN18
WikiGenes90139
SOURCE (Princeton)TSPAN18
Genetics Home Reference (NIH)TSPAN18
Genomic and cartography
GoldenPath hg38 (UCSC)TSPAN18  -     chr11:44764426-44932426 +  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPAN18  -     11p11.2   [Description]    (hg19-Feb_2009)
EnsemblTSPAN18 - 11p11.2 [CytoView hg19]  TSPAN18 - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBITSPAN18 [Mapview hg19]  TSPAN18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027515 AK027715 AK075547 AY358087 BC019342
RefSeq transcript (Entrez)NM_001031730 NM_130783
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPAN18
Cluster EST : UnigeneHs.385634 [ NCBI ]
CGAP (NCI)Hs.385634
Alternative Splicing GalleryENSG00000157570
Gene ExpressionTSPAN18 [ NCBI-GEO ]   TSPAN18 [ EBI - ARRAY_EXPRESS ]   TSPAN18 [ SEEK ]   TSPAN18 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90139
GTEX Portal (Tissue expression)TSPAN18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96SJ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96SJ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96SJ8
Splice isoforms : SwissVarQ96SJ8
PhosPhoSitePlusQ96SJ8
Domaine pattern : Prosite (Expaxy)TM4_1 (PS00421)   
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_CS    Tetraspanin_EC2   
Domain families : Pfam (Sanger)Tetraspannin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN18
DMDM Disease mutations90139
Blocks (Seattle)TSPAN18
SuperfamilyQ96SJ8
Human Protein AtlasENSG00000157570
Peptide AtlasQ96SJ8
HPRD17435
IPIIPI00045742   IPI00382955   IPI00982465   IPI00973885   IPI00981784   IPI00979894   IPI00980588   
Protein Interaction databases
DIP (DOE-UCLA)Q96SJ8
IntAct (EBI)Q96SJ8
FunCoupENSG00000157570
BioGRIDTSPAN18
STRING (EMBL)TSPAN18
ZODIACTSPAN18
Ontologies - Pathways
QuickGOQ96SJ8
Ontology : AmiGOintegral component of plasma membrane  cell surface receptor signaling pathway  
Ontology : EGO-EBIintegral component of plasma membrane  cell surface receptor signaling pathway  
NDEx NetworkTSPAN18
Atlas of Cancer Signalling NetworkTSPAN18
Wikipedia pathwaysTSPAN18
Orthology - Evolution
OrthoDB90139
GeneTree (enSembl)ENSG00000157570
Phylogenetic Trees/Animal Genes : TreeFamTSPAN18
HOVERGENQ96SJ8
HOGENOMQ96SJ8
Homologs : HomoloGeneTSPAN18
Homology/Alignments : Family Browser (UCSC)TSPAN18
Gene fusions - Rearrangements
Fusion: TCGACAMK1D TSPAN18
Fusion: TCGAATG13 TSPAN18
Fusion: TCGADDX6 TSPAN18
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN18
dbVarTSPAN18
ClinVarTSPAN18
1000_GenomesTSPAN18 
Exome Variant ServerTSPAN18
ExAC (Exome Aggregation Consortium)TSPAN18 (select the gene name)
Genetic variants : HAPMAP90139
Genomic Variants (DGV)TSPAN18 [DGVbeta]
DECIPHERTSPAN18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPAN18 
Mutations
ICGC Data PortalTSPAN18 
TCGA Data PortalTSPAN18 
Broad Tumor PortalTSPAN18
OASIS PortalTSPAN18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPAN18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPAN18
DgiDB (Drug Gene Interaction Database)TSPAN18
DoCM (Curated mutations)TSPAN18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN18 (select a term)
intoGenTSPAN18
Cancer3DTSPAN18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTSPAN18
Genetic Testing Registry TSPAN18
NextProtQ96SJ8 [Medical]
TSGene90139
GENETestsTSPAN18
Target ValidationTSPAN18
Huge Navigator TSPAN18 [HugePedia]
snp3D : Map Gene to Disease90139
BioCentury BCIQTSPAN18
ClinGenTSPAN18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90139
Chemical/Pharm GKB GenePA142670688
Clinical trialTSPAN18
Miscellaneous
canSAR (ICR)TSPAN18 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPAN18
EVEXTSPAN18
GoPubMedTSPAN18
iHOPTSPAN18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:43 CEST 2017

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