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TSPAN18 (tetraspanin 18)

Identity

Alias (NCBI)TSPAN
HGNC (Hugo) TSPAN18
HGNC Alias symbTSPAN
LocusID (NCBI) 90139
Atlas_Id 75235
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 44726962 and ends at 44932423 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATG13 (11p11.2) / TSPAN18 (11p11.2)CAMK1D (10p13) / TSPAN18 (11p11.2)DDX6 (11q23.3) / TSPAN18 (11p11.2)
TSPAN18 (11p11.2) / TMEM151B (6p21.1)TSPAN18 (11p11.2) / TSPAN18 (11p11.2)CAMK1D TSPAN18
ATG13 TSPAN18DDX6 TSPAN18

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSPAN18   20660
Cards
Entrez_Gene (NCBI)TSPAN18    tetraspanin 18
AliasesTSPAN
GeneCards (Weizmann)TSPAN18
Ensembl hg19 (Hinxton)ENSG00000157570 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157570 [Gene_View]  ENSG00000157570 [Sequence]  chr11:44726962-44932423 [Contig_View]  TSPAN18 [Vega]
ICGC DataPortalENSG00000157570
TCGA cBioPortalTSPAN18
AceView (NCBI)TSPAN18
Genatlas (Paris)TSPAN18
SOURCE (Princeton)TSPAN18
Genetics Home Reference (NIH)TSPAN18
Genomic and cartography
GoldenPath hg38 (UCSC)TSPAN18  -     chr11:44726962-44932423 +  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPAN18  -     11p11.2   [Description]    (hg19-Feb_2009)
GoldenPathTSPAN18 - 11p11.2 [CytoView hg19]  TSPAN18 - 11p11.2 [CytoView hg38]
ImmunoBaseENSG00000157570
Genome Data Viewer NCBITSPAN18 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK027515 AK027715 AK075547 AY358087 BC019342
RefSeq transcript (Entrez)NM_001031730 NM_130783
Consensus coding sequences : CCDS (NCBI)TSPAN18
Gene ExpressionTSPAN18 [ NCBI-GEO ]   TSPAN18 [ EBI - ARRAY_EXPRESS ]   TSPAN18 [ SEEK ]   TSPAN18 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN18 [ Firebrowse - Broad ]
GenevisibleExpression of TSPAN18 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90139
GTEX Portal (Tissue expression)TSPAN18
Human Protein AtlasENSG00000157570-TSPAN18 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96SJ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96SJ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96SJ8
PhosPhoSitePlusQ96SJ8
Domaine pattern : Prosite (Expaxy)TM4_1 (PS00421)   
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_CS    Tetraspanin_EC2_sf   
Domain families : Pfam (Sanger)Tetraspanin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN18
SuperfamilyQ96SJ8
AlphaFold pdb e-kbQ96SJ8   
Human Protein Atlas [tissue]ENSG00000157570-TSPAN18 [tissue]
HPRD17435
Protein Interaction databases
DIP (DOE-UCLA)Q96SJ8
IntAct (EBI)Q96SJ8
BioGRIDTSPAN18
STRING (EMBL)TSPAN18
ZODIACTSPAN18
Ontologies - Pathways
QuickGOQ96SJ8
Ontology : AmiGOintegral component of plasma membrane  
Ontology : EGO-EBIintegral component of plasma membrane  
NDEx NetworkTSPAN18
Atlas of Cancer Signalling NetworkTSPAN18
Wikipedia pathwaysTSPAN18
Orthology - Evolution
OrthoDB90139
GeneTree (enSembl)ENSG00000157570
Phylogenetic Trees/Animal Genes : TreeFamTSPAN18
Homologs : HomoloGeneTSPAN18
Homology/Alignments : Family Browser (UCSC)TSPAN18
Gene fusions - Rearrangements
Fusion : QuiverTSPAN18
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN18
dbVarTSPAN18
ClinVarTSPAN18
MonarchTSPAN18
1000_GenomesTSPAN18 
Exome Variant ServerTSPAN18
GNOMAD BrowserENSG00000157570
Varsome BrowserTSPAN18
ACMGTSPAN18 variants
VarityQ96SJ8
Genomic Variants (DGV)TSPAN18 [DGVbeta]
DECIPHERTSPAN18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPAN18 
Mutations
ICGC Data PortalTSPAN18 
TCGA Data PortalTSPAN18 
Broad Tumor PortalTSPAN18
OASIS PortalTSPAN18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN18  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSPAN18
Mutations and Diseases : HGMDTSPAN18
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSPAN18
DgiDB (Drug Gene Interaction Database)TSPAN18
DoCM (Curated mutations)TSPAN18
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN18
Cancer3DTSPAN18
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTSPAN18
MedgenTSPAN18
Genetic Testing Registry TSPAN18
NextProtQ96SJ8 [Medical]
GENETestsTSPAN18
Target ValidationTSPAN18
Huge Navigator TSPAN18 [HugePedia]
ClinGenTSPAN18
Clinical trials, drugs, therapy
MyCancerGenomeTSPAN18
Protein Interactions : CTDTSPAN18
Pharm GKB GenePA142670688
PharosQ96SJ8
Clinical trialTSPAN18
Miscellaneous
canSAR (ICR)TSPAN18
HarmonizomeTSPAN18
DataMed IndexTSPAN18
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSPAN18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:08 CEST 2021

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