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TSPAN19 (tetraspanin 19)

Identity

Other alias-
HGNC (Hugo) TSPAN19
LocusID (NCBI) 144448
Atlas_Id 75236
Location 12q21.31  [Link to chromosome band 12q21]
Location_base_pair Starts at 85014315 and ends at 85036277 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPAN19   31886
Cards
Entrez_Gene (NCBI)TSPAN19  144448  tetraspanin 19
Aliases
GeneCards (Weizmann)TSPAN19
Ensembl hg19 (Hinxton)ENSG00000231738 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231738 [Gene_View]  chr12:85014315-85036277 [Contig_View]  TSPAN19 [Vega]
ICGC DataPortalENSG00000231738
TCGA cBioPortalTSPAN19
AceView (NCBI)TSPAN19
Genatlas (Paris)TSPAN19
WikiGenes144448
SOURCE (Princeton)TSPAN19
Genetics Home Reference (NIH)TSPAN19
Genomic and cartography
GoldenPath hg38 (UCSC)TSPAN19  -     chr12:85014315-85036277 -  12q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPAN19  -     12q21.31   [Description]    (hg19-Feb_2009)
EnsemblTSPAN19 - 12q21.31 [CytoView hg19]  TSPAN19 - 12q21.31 [CytoView hg38]
Mapping of homologs : NCBITSPAN19 [Mapview hg19]  TSPAN19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126325 BX116902 CB852874 CB854430
RefSeq transcript (Entrez)NM_001100917
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPAN19
Cluster EST : UnigeneHs.156962 [ NCBI ]
CGAP (NCI)Hs.156962
Alternative Splicing GalleryENSG00000231738
Gene ExpressionTSPAN19 [ NCBI-GEO ]   TSPAN19 [ EBI - ARRAY_EXPRESS ]   TSPAN19 [ SEEK ]   TSPAN19 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144448
GTEX Portal (Tissue expression)TSPAN19
Human Protein AtlasENSG00000231738-TSPAN19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C672   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C672  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C672
Splice isoforms : SwissVarP0C672
PhosPhoSitePlusP0C672
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_EC2   
Domain families : Pfam (Sanger)Tetraspannin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN19
DMDM Disease mutations144448
Blocks (Seattle)TSPAN19
SuperfamilyP0C672
Human Protein Atlas [tissue]ENSG00000231738-TSPAN19 [tissue]
Peptide AtlasP0C672
IPIIPI00083978   IPI01020724   IPI01021554   IPI01014015   
Protein Interaction databases
DIP (DOE-UCLA)P0C672
IntAct (EBI)P0C672
FunCoupENSG00000231738
BioGRIDTSPAN19
STRING (EMBL)TSPAN19
ZODIACTSPAN19
Ontologies - Pathways
QuickGOP0C672
Ontology : AmiGOintegral component of plasma membrane  cell surface receptor signaling pathway  
Ontology : EGO-EBIintegral component of plasma membrane  cell surface receptor signaling pathway  
NDEx NetworkTSPAN19
Atlas of Cancer Signalling NetworkTSPAN19
Wikipedia pathwaysTSPAN19
Orthology - Evolution
OrthoDB144448
GeneTree (enSembl)ENSG00000231738
Phylogenetic Trees/Animal Genes : TreeFamTSPAN19
HOVERGENP0C672
HOGENOMP0C672
Homologs : HomoloGeneTSPAN19
Homology/Alignments : Family Browser (UCSC)TSPAN19
Gene fusions - Rearrangements
Fusion: Tumor Portal TSPAN19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN19
dbVarTSPAN19
ClinVarTSPAN19
1000_GenomesTSPAN19 
Exome Variant ServerTSPAN19
ExAC (Exome Aggregation Consortium)ENSG00000231738
GNOMAD BrowserENSG00000231738
Genetic variants : HAPMAP144448
Genomic Variants (DGV)TSPAN19 [DGVbeta]
DECIPHERTSPAN19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPAN19 
Mutations
ICGC Data PortalTSPAN19 
TCGA Data PortalTSPAN19 
Broad Tumor PortalTSPAN19
OASIS PortalTSPAN19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPAN19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPAN19
DgiDB (Drug Gene Interaction Database)TSPAN19
DoCM (Curated mutations)TSPAN19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN19 (select a term)
intoGenTSPAN19
Cancer3DTSPAN19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTSPAN19
Genetic Testing Registry TSPAN19
NextProtP0C672 [Medical]
TSGene144448
GENETestsTSPAN19
Target ValidationTSPAN19
Huge Navigator TSPAN19 [HugePedia]
snp3D : Map Gene to Disease144448
BioCentury BCIQTSPAN19
ClinGenTSPAN19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144448
Chemical/Pharm GKB GenePA142670689
Clinical trialTSPAN19
Miscellaneous
canSAR (ICR)TSPAN19 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPAN19
EVEXTSPAN19
GoPubMedTSPAN19
iHOPTSPAN19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:34:14 CET 2017

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