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TSPAN19 (tetraspanin 19)

Identity

Alias (NCBI)-
HGNC (Hugo) TSPAN19
LocusID (NCBI) 144448
Atlas_Id 75236
Location 12q21.31  [Link to chromosome band 12q21]
Location_base_pair Starts at 85014317 and ends at 85036277 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSPAN19   31886
Cards
Entrez_Gene (NCBI)TSPAN19    tetraspanin 19
Aliases
GeneCards (Weizmann)TSPAN19
Ensembl hg19 (Hinxton)ENSG00000231738 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231738 [Gene_View]  ENSG00000231738 [Sequence]  chr12:85014317-85036277 [Contig_View]  TSPAN19 [Vega]
ICGC DataPortalENSG00000231738
TCGA cBioPortalTSPAN19
AceView (NCBI)TSPAN19
Genatlas (Paris)TSPAN19
SOURCE (Princeton)TSPAN19
Genetics Home Reference (NIH)TSPAN19
Genomic and cartography
GoldenPath hg38 (UCSC)TSPAN19  -     chr12:85014317-85036277 -  12q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPAN19  -     12q21.31   [Description]    (hg19-Feb_2009)
GoldenPathTSPAN19 - 12q21.31 [CytoView hg19]  TSPAN19 - 12q21.31 [CytoView hg38]
ImmunoBaseENSG00000231738
Genome Data Viewer NCBITSPAN19 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK126325 BX116902 CB852874 CB854430
RefSeq transcript (Entrez)NM_001100917
Consensus coding sequences : CCDS (NCBI)TSPAN19
Gene ExpressionTSPAN19 [ NCBI-GEO ]   TSPAN19 [ EBI - ARRAY_EXPRESS ]   TSPAN19 [ SEEK ]   TSPAN19 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN19 [ Firebrowse - Broad ]
GenevisibleExpression of TSPAN19 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144448
GTEX Portal (Tissue expression)TSPAN19
Human Protein AtlasENSG00000231738-TSPAN19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C672   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C672  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C672
PhosPhoSitePlusP0C672
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_EC2_sf   
Domain families : Pfam (Sanger)Tetraspanin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN19
SuperfamilyP0C672
AlphaFold pdb e-kbP0C672   
Human Protein Atlas [tissue]ENSG00000231738-TSPAN19 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)P0C672
IntAct (EBI)P0C672
BioGRIDTSPAN19
STRING (EMBL)TSPAN19
ZODIACTSPAN19
Ontologies - Pathways
QuickGOP0C672
Ontology : AmiGOintegral component of plasma membrane  
Ontology : EGO-EBIintegral component of plasma membrane  
NDEx NetworkTSPAN19
Atlas of Cancer Signalling NetworkTSPAN19
Wikipedia pathwaysTSPAN19
Orthology - Evolution
OrthoDB144448
GeneTree (enSembl)ENSG00000231738
Phylogenetic Trees/Animal Genes : TreeFamTSPAN19
Homologs : HomoloGeneTSPAN19
Homology/Alignments : Family Browser (UCSC)TSPAN19
Gene fusions - Rearrangements
Fusion : QuiverTSPAN19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN19
dbVarTSPAN19
ClinVarTSPAN19
MonarchTSPAN19
1000_GenomesTSPAN19 
Exome Variant ServerTSPAN19
GNOMAD BrowserENSG00000231738
Varsome BrowserTSPAN19
ACMGTSPAN19 variants
VarityP0C672
Genomic Variants (DGV)TSPAN19 [DGVbeta]
DECIPHERTSPAN19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPAN19 
Mutations
ICGC Data PortalTSPAN19 
TCGA Data PortalTSPAN19 
Broad Tumor PortalTSPAN19
OASIS PortalTSPAN19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN19  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSPAN19
Mutations and Diseases : HGMDTSPAN19
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSPAN19
DgiDB (Drug Gene Interaction Database)TSPAN19
DoCM (Curated mutations)TSPAN19
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN19
Cancer3DTSPAN19
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTSPAN19
MedgenTSPAN19
Genetic Testing Registry TSPAN19
NextProtP0C672 [Medical]
GENETestsTSPAN19
Target ValidationTSPAN19
Huge Navigator TSPAN19 [HugePedia]
ClinGenTSPAN19
Clinical trials, drugs, therapy
MyCancerGenomeTSPAN19
Protein Interactions : CTDTSPAN19
Pharm GKB GenePA142670689
PharosP0C672
Clinical trialTSPAN19
Miscellaneous
canSAR (ICR)TSPAN19
HarmonizomeTSPAN19
DataMed IndexTSPAN19
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSPAN19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:27:09 CEST 2021

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