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TSPAN2 (tetraspanin 2)

Identity

Alias_symbol (synonym)TSPAN-2
TSN2
FLJ12082
Other aliasNET3
HGNC (Hugo) TSPAN2
LocusID (NCBI) 10100
Atlas_Id 54730
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 115590633 and ends at 115632121 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TSPAN2 (1p13.2) / KIAA1551 (12p11.21)TSPAN2 (1p13.2) / KLF7 (2q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPAN2   20659
Cards
Entrez_Gene (NCBI)TSPAN2  10100  tetraspanin 2
AliasesNET3; TSN2; TSPAN-2
GeneCards (Weizmann)TSPAN2
Ensembl hg19 (Hinxton)ENSG00000134198 [Gene_View]  chr1:115590633-115632121 [Contig_View]  TSPAN2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000134198 [Gene_View]  chr1:115590633-115632121 [Contig_View]  TSPAN2 [Vega]
ICGC DataPortalENSG00000134198
TCGA cBioPortalTSPAN2
AceView (NCBI)TSPAN2
Genatlas (Paris)TSPAN2
WikiGenes10100
SOURCE (Princeton)TSPAN2
Genetics Home Reference (NIH)TSPAN2
Genomic and cartography
GoldenPath hg19 (UCSC)TSPAN2  -     chr1:115590633-115632121 -  1p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TSPAN2  -     1p13.2   [Description]    (hg38-Dec_2013)
EnsemblTSPAN2 - 1p13.2 [CytoView hg19]  TSPAN2 - 1p13.2 [CytoView hg38]
Mapping of homologs : NCBITSPAN2 [Mapview hg19]  TSPAN2 [Mapview hg38]
OMIM613133   
Gene and transcription
Genbank (Entrez)AA724831 AF054839 AK022144 AK315385 AU117697
RefSeq transcript (Entrez)NM_001308315 NM_001308316 NM_005725
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)TSPAN2
Cluster EST : UnigeneHs.310458 [ NCBI ]
CGAP (NCI)Hs.310458
Alternative Splicing GalleryENSG00000134198
Gene ExpressionTSPAN2 [ NCBI-GEO ]   TSPAN2 [ EBI - ARRAY_EXPRESS ]   TSPAN2 [ SEEK ]   TSPAN2 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10100
GTEX Portal (Tissue expression)TSPAN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60636   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60636  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60636
Splice isoforms : SwissVarO60636
PhosPhoSitePlusO60636
Domaine pattern : Prosite (Expaxy)TM4_1 (PS00421)   
Domains : Interpro (EBI)CD81_LEL    Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_CS    Tetraspanin_EC2   
Domain families : Pfam (Sanger)Tetraspannin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN2
DMDM Disease mutations10100
Blocks (Seattle)TSPAN2
SuperfamilyO60636
Human Protein AtlasENSG00000134198
Peptide AtlasO60636
HPRD18233
IPIIPI00030938   IPI00514647   IPI00743149   IPI00513697   
Protein Interaction databases
DIP (DOE-UCLA)O60636
IntAct (EBI)O60636
FunCoupENSG00000134198
BioGRIDTSPAN2
STRING (EMBL)TSPAN2
ZODIACTSPAN2
Ontologies - Pathways
QuickGOO60636
Ontology : AmiGOprotein binding  integral component of plasma membrane  inflammatory response  cell surface receptor signaling pathway  brain development  astrocyte development  microglia development  integral component of membrane  myelination  myelin sheath  oligodendrocyte differentiation  axon development  
Ontology : EGO-EBIprotein binding  integral component of plasma membrane  inflammatory response  cell surface receptor signaling pathway  brain development  astrocyte development  microglia development  integral component of membrane  myelination  myelin sheath  oligodendrocyte differentiation  axon development  
NDEx NetworkTSPAN2
Atlas of Cancer Signalling NetworkTSPAN2
Wikipedia pathwaysTSPAN2
Orthology - Evolution
OrthoDB10100
GeneTree (enSembl)ENSG00000134198
Phylogenetic Trees/Animal Genes : TreeFamTSPAN2
HOVERGENO60636
HOGENOMO60636
Homologs : HomoloGeneTSPAN2
Homology/Alignments : Family Browser (UCSC)TSPAN2
Gene fusions - Rearrangements
Fusion : MitelmanTSPAN2/KIAA1551 [1p13.2/12p11.21]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN2
dbVarTSPAN2
ClinVarTSPAN2
1000_GenomesTSPAN2 
Exome Variant ServerTSPAN2
ExAC (Exome Aggregation Consortium)TSPAN2 (select the gene name)
Genetic variants : HAPMAP10100
Genomic Variants (DGV)TSPAN2 [DGVbeta]
DECIPHER (Syndromes)1:115590633-115632121  ENSG00000134198
CONAN: Copy Number AnalysisTSPAN2 
Mutations
ICGC Data PortalTSPAN2 
TCGA Data PortalTSPAN2 
Broad Tumor PortalTSPAN2
OASIS PortalTSPAN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPAN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPAN2
DgiDB (Drug Gene Interaction Database)TSPAN2
DoCM (Curated mutations)TSPAN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN2 (select a term)
intoGenTSPAN2
Cancer3DTSPAN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613133   
Orphanet
MedgenTSPAN2
Genetic Testing Registry TSPAN2
NextProtO60636 [Medical]
TSGene10100
GENETestsTSPAN2
Huge Navigator TSPAN2 [HugePedia]
snp3D : Map Gene to Disease10100
BioCentury BCIQTSPAN2
ClinGenTSPAN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10100
Chemical/Pharm GKB GenePA134938787
Clinical trialTSPAN2
Miscellaneous
canSAR (ICR)TSPAN2 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPAN2
EVEXTSPAN2
GoPubMedTSPAN2
iHOPTSPAN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:32:36 CET 2017

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