Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TSPAN3 (tetraspanin 3)

Identity

Alias_namesTM4SF8
transmembrane 4 superfamily member 8
Alias_symbol (synonym)TM4-A
TSPAN-3
Other alias
HGNC (Hugo) TSPAN3
LocusID (NCBI) 10099
Atlas_Id 55815
Location 15q24.3  [Link to chromosome band 15q24]
Location_base_pair Starts at 77336360 and ends at 77363570 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANKH (5p15.2) / TSPAN3 (15q24.3)MICU1 (10q22.1) / TSPAN3 (15q24.3)PAM16 (16p13.3) / TSPAN3 (15q24.3)
TSPAN3 (15q24.3) / CFB (6p21.33)TSPAN3 (15q24.3) / FLRT2 (14q31.3)TSPAN3 (15q24.3) / TSPAN3 (15q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPAN3   17752
Cards
Entrez_Gene (NCBI)TSPAN3  10099  tetraspanin 3
AliasesTM4-A; TM4SF8; TSPAN-3
GeneCards (Weizmann)TSPAN3
Ensembl hg19 (Hinxton)ENSG00000140391 [Gene_View]  chr15:77336360-77363570 [Contig_View]  TSPAN3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000140391 [Gene_View]  chr15:77336360-77363570 [Contig_View]  TSPAN3 [Vega]
ICGC DataPortalENSG00000140391
TCGA cBioPortalTSPAN3
AceView (NCBI)TSPAN3
Genatlas (Paris)TSPAN3
WikiGenes10099
SOURCE (Princeton)TSPAN3
Genetics Home Reference (NIH)TSPAN3
Genomic and cartography
GoldenPath hg19 (UCSC)TSPAN3  -     chr15:77336360-77363570 -  15q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TSPAN3  -     15q24.3   [Description]    (hg38-Dec_2013)
EnsemblTSPAN3 - 15q24.3 [CytoView hg19]  TSPAN3 - 15q24.3 [CytoView hg38]
Mapping of homologs : NCBITSPAN3 [Mapview hg19]  TSPAN3 [Mapview hg38]
OMIM613134   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001168412 NM_005724 NM_198902
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPAN3
Cluster EST : UnigeneHs.744863 [ NCBI ]
CGAP (NCI)Hs.744863
Alternative Splicing GalleryENSG00000140391
Gene ExpressionTSPAN3 [ NCBI-GEO ]   TSPAN3 [ EBI - ARRAY_EXPRESS ]   TSPAN3 [ SEEK ]   TSPAN3 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10099
GTEX Portal (Tissue expression)TSPAN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60637   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60637  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60637
Splice isoforms : SwissVarO60637
PhosPhoSitePlusO60637
Domaine pattern : Prosite (Expaxy)TM4_1 (PS00421)   
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_CS    Tetraspanin_EC2   
Domain families : Pfam (Sanger)Tetraspannin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN3
DMDM Disease mutations10099
Blocks (Seattle)TSPAN3
SuperfamilyO60637
Human Protein AtlasENSG00000140391
Peptide AtlasO60637
HPRD15512
IPIIPI00030941   IPI00909168   IPI00910611   IPI00396249   
Protein Interaction databases
DIP (DOE-UCLA)O60637
IntAct (EBI)O60637
FunCoupENSG00000140391
BioGRIDTSPAN3
STRING (EMBL)TSPAN3
ZODIACTSPAN3
Ontologies - Pathways
QuickGOO60637
Ontology : AmiGOmolecular_function  integral component of plasma membrane  cell surface receptor signaling pathway  biological_process  extracellular exosome  
Ontology : EGO-EBImolecular_function  integral component of plasma membrane  cell surface receptor signaling pathway  biological_process  extracellular exosome  
NDEx NetworkTSPAN3
Atlas of Cancer Signalling NetworkTSPAN3
Wikipedia pathwaysTSPAN3
Orthology - Evolution
OrthoDB10099
GeneTree (enSembl)ENSG00000140391
Phylogenetic Trees/Animal Genes : TreeFamTSPAN3
HOVERGENO60637
HOGENOMO60637
Homologs : HomoloGeneTSPAN3
Homology/Alignments : Family Browser (UCSC)TSPAN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN3
dbVarTSPAN3
ClinVarTSPAN3
1000_GenomesTSPAN3 
Exome Variant ServerTSPAN3
ExAC (Exome Aggregation Consortium)TSPAN3 (select the gene name)
Genetic variants : HAPMAP10099
Genomic Variants (DGV)TSPAN3 [DGVbeta]
DECIPHER (Syndromes)15:77336360-77363570  ENSG00000140391
CONAN: Copy Number AnalysisTSPAN3 
Mutations
ICGC Data PortalTSPAN3 
TCGA Data PortalTSPAN3 
Broad Tumor PortalTSPAN3
OASIS PortalTSPAN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPAN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPAN3
DgiDB (Drug Gene Interaction Database)TSPAN3
DoCM (Curated mutations)TSPAN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN3 (select a term)
intoGenTSPAN3
Cancer3DTSPAN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613134   
Orphanet
MedgenTSPAN3
Genetic Testing Registry TSPAN3
NextProtO60637 [Medical]
TSGene10099
GENETestsTSPAN3
Huge Navigator TSPAN3 [HugePedia]
snp3D : Map Gene to Disease10099
BioCentury BCIQTSPAN3
ClinGenTSPAN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10099
Chemical/Pharm GKB GenePA134913500
Clinical trialTSPAN3
Miscellaneous
canSAR (ICR)TSPAN3 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPAN3
EVEXTSPAN3
GoPubMedTSPAN3
iHOPTSPAN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:32:37 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.