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TSPAN31 (tetraspanin 31)

Identity

Alias (NCBI)SAS
HGNC (Hugo) TSPAN31
HGNC Previous nameSAS
HGNC Previous namesarcoma amplified sequence
LocusID (NCBI) 6302
Atlas_Id 237
Location 12q14.1  [Link to chromosome band 12q14]
Location_base_pair Starts at 57745039 and ends at 57750219 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CTDSP2 (12q14.1) / TSPAN31 (12q14.1)HM13 (20q11.21) / TSPAN31 (12q14.1)ITPRIPL1 (2q11.2) / TSPAN31 (12q14.1)
TSPAN31 (12q14.1) / ALS2 (2q33.1)TSPAN31 (12q14.1) / C11orf63 (11q24.1)TSPAN31 (12q14.1) / DNASE1 (16p13.3)
TSPAN31 (12q14.1) / IL1R1 (2q12.1)TSPAN31 (12q14.1) / PAK3 (Xq23)CTDSP2 12q14.1 / TSPAN31 12q14.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(12;20)(q14;q11) HM13/TSPAN31


External links

 

Nomenclature
HGNC (Hugo)TSPAN31   10539
Cards
Entrez_Gene (NCBI)TSPAN31    tetraspanin 31
AliasesSAS
GeneCards (Weizmann)TSPAN31
Ensembl hg19 (Hinxton)ENSG00000135452 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135452 [Gene_View]  ENSG00000135452 [Sequence]  chr12:57745039-57750219 [Contig_View]  TSPAN31 [Vega]
ICGC DataPortalENSG00000135452
TCGA cBioPortalTSPAN31
AceView (NCBI)TSPAN31
Genatlas (Paris)TSPAN31
SOURCE (Princeton)TSPAN31
Genetics Home Reference (NIH)TSPAN31
Genomic and cartography
GoldenPath hg38 (UCSC)TSPAN31  -     chr12:57745039-57750219 +  12q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPAN31  -     12q14.1   [Description]    (hg19-Feb_2009)
GoldenPathTSPAN31 - 12q14.1 [CytoView hg19]  TSPAN31 - 12q14.1 [CytoView hg38]
ImmunoBaseENSG00000135452
Genome Data Viewer NCBITSPAN31 [Mapview hg19]  
OMIM181035   
Gene and transcription
Genbank (Entrez)AA811975 AK090502 AK294128 AK315765 AU098749
RefSeq transcript (Entrez)NM_001330168 NM_001330169 NM_005981
Consensus coding sequences : CCDS (NCBI)TSPAN31
Gene ExpressionTSPAN31 [ NCBI-GEO ]   TSPAN31 [ EBI - ARRAY_EXPRESS ]   TSPAN31 [ SEEK ]   TSPAN31 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN31 [ Firebrowse - Broad ]
GenevisibleExpression of TSPAN31 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6302
GTEX Portal (Tissue expression)TSPAN31
Human Protein AtlasENSG00000135452-TSPAN31 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12999   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12999  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12999
PhosPhoSitePlusQ12999
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin   
Domain families : Pfam (Sanger)Tetraspanin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN31
SuperfamilyQ12999
AlphaFold pdb e-kbQ12999   
Human Protein Atlas [tissue]ENSG00000135452-TSPAN31 [tissue]
HPRD01626
Protein Interaction databases
DIP (DOE-UCLA)Q12999
IntAct (EBI)Q12999
BioGRIDTSPAN31
STRING (EMBL)TSPAN31
ZODIACTSPAN31
Ontologies - Pathways
QuickGOQ12999
Ontology : AmiGOprotein binding  integral component of plasma membrane  positive regulation of cell population proliferation  membrane  
Ontology : EGO-EBIprotein binding  integral component of plasma membrane  positive regulation of cell population proliferation  membrane  
NDEx NetworkTSPAN31
Atlas of Cancer Signalling NetworkTSPAN31
Wikipedia pathwaysTSPAN31
Orthology - Evolution
OrthoDB6302
GeneTree (enSembl)ENSG00000135452
Phylogenetic Trees/Animal Genes : TreeFamTSPAN31
Homologs : HomoloGeneTSPAN31
Homology/Alignments : Family Browser (UCSC)TSPAN31
Gene fusions - Rearrangements
Fusion : MitelmanCTDSP2/TSPAN31 [12q14.1/12q14.1]  
Fusion : QuiverTSPAN31
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN31
dbVarTSPAN31
ClinVarTSPAN31
MonarchTSPAN31
1000_GenomesTSPAN31 
Exome Variant ServerTSPAN31
GNOMAD BrowserENSG00000135452
Varsome BrowserTSPAN31
ACMGTSPAN31 variants
VarityQ12999
Genomic Variants (DGV)TSPAN31 [DGVbeta]
DECIPHERTSPAN31 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPAN31 
Mutations
ICGC Data PortalTSPAN31 
TCGA Data PortalTSPAN31 
Broad Tumor PortalTSPAN31
OASIS PortalTSPAN31 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN31  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSPAN31
Mutations and Diseases : HGMDTSPAN31
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSPAN31
DgiDB (Drug Gene Interaction Database)TSPAN31
DoCM (Curated mutations)TSPAN31
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN31
Cancer3DTSPAN31
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM181035   
Orphanet
DisGeNETTSPAN31
MedgenTSPAN31
Genetic Testing Registry TSPAN31
NextProtQ12999 [Medical]
GENETestsTSPAN31
Target ValidationTSPAN31
Huge Navigator TSPAN31 [HugePedia]
ClinGenTSPAN31
Clinical trials, drugs, therapy
MyCancerGenomeTSPAN31
Protein Interactions : CTDTSPAN31
Pharm GKB GenePA34949
PharosQ12999
Clinical trialTSPAN31
Miscellaneous
canSAR (ICR)TSPAN31
HarmonizomeTSPAN31
DataMed IndexTSPAN31
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSPAN31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:36:39 CEST 2021

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