Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TSPAN31 (tetraspanin 31)

Identity

Alias_namesSAS
sarcoma amplified sequence
Other alias
HGNC (Hugo) TSPAN31
LocusID (NCBI) 6302
Atlas_Id 237
Location 12q14.1  [Link to chromosome band 12q14]
Location_base_pair Starts at 57744989 and ends at 57748243 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CTDSP2 (12q14.1) / TSPAN31 (12q14.1)HM13 (20q11.21) / TSPAN31 (12q14.1)ITPRIPL1 (2q11.2) / TSPAN31 (12q14.1)
TSPAN31 (12q14.1) / ALS2 (2q33.1)TSPAN31 (12q14.1) / C11orf63 (11q24.1)TSPAN31 (12q14.1) / DNASE1 (16p13.3)
TSPAN31 (12q14.1) / IL1R1 (2q12.1)TSPAN31 (12q14.1) / PAK3 (Xq23)CTDSP2 12q14.1 / TSPAN31 12q14.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(12;20)(q14;q11) HM13/TSPAN31

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  CTDSP2/TSPAN31 (12q14)

External links

Nomenclature
HGNC (Hugo)TSPAN31   10539
Cards
Entrez_Gene (NCBI)TSPAN31  6302  tetraspanin 31
AliasesSAS
GeneCards (Weizmann)TSPAN31
Ensembl hg19 (Hinxton)ENSG00000135452 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135452 [Gene_View]  ENSG00000135452 [Sequence]  chr12:57744989-57748243 [Contig_View]  TSPAN31 [Vega]
ICGC DataPortalENSG00000135452
TCGA cBioPortalTSPAN31
AceView (NCBI)TSPAN31
Genatlas (Paris)TSPAN31
WikiGenes6302
SOURCE (Princeton)TSPAN31
Genetics Home Reference (NIH)TSPAN31
Genomic and cartography
GoldenPath hg38 (UCSC)TSPAN31  -     chr12:57744989-57748243 +  12q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPAN31  -     12q14.1   [Description]    (hg19-Feb_2009)
EnsemblTSPAN31 - 12q14.1 [CytoView hg19]  TSPAN31 - 12q14.1 [CytoView hg38]
Mapping of homologs : NCBITSPAN31 [Mapview hg19]  TSPAN31 [Mapview hg38]
OMIM181035   
Gene and transcription
Genbank (Entrez)AA811975 AK090502 AK294128 AK315765 AU098749
RefSeq transcript (Entrez)NM_001330168 NM_001330169 NM_005981
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPAN31
Cluster EST : UnigeneHs.632708 [ NCBI ]
CGAP (NCI)Hs.632708
Alternative Splicing GalleryENSG00000135452
Gene ExpressionTSPAN31 [ NCBI-GEO ]   TSPAN31 [ EBI - ARRAY_EXPRESS ]   TSPAN31 [ SEEK ]   TSPAN31 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN31 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6302
GTEX Portal (Tissue expression)TSPAN31
Human Protein AtlasENSG00000135452-TSPAN31 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12999   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12999  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12999
Splice isoforms : SwissVarQ12999
PhosPhoSitePlusQ12999
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin   
Domain families : Pfam (Sanger)Tetraspannin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN31
DMDM Disease mutations6302
Blocks (Seattle)TSPAN31
SuperfamilyQ12999
Human Protein Atlas [tissue]ENSG00000135452-TSPAN31 [tissue]
Peptide AtlasQ12999
HPRD01626
IPIIPI00030418   IPI01020684   IPI01020830   IPI01022787   IPI01022931   IPI00555815   IPI01021997   
Protein Interaction databases
DIP (DOE-UCLA)Q12999
IntAct (EBI)Q12999
FunCoupENSG00000135452
BioGRIDTSPAN31
STRING (EMBL)TSPAN31
ZODIACTSPAN31
Ontologies - Pathways
QuickGOQ12999
Ontology : AmiGOintegral component of plasma membrane  cell surface receptor signaling pathway  positive regulation of cell proliferation  membrane  
Ontology : EGO-EBIintegral component of plasma membrane  cell surface receptor signaling pathway  positive regulation of cell proliferation  membrane  
NDEx NetworkTSPAN31
Atlas of Cancer Signalling NetworkTSPAN31
Wikipedia pathwaysTSPAN31
Orthology - Evolution
OrthoDB6302
GeneTree (enSembl)ENSG00000135452
Phylogenetic Trees/Animal Genes : TreeFamTSPAN31
HOVERGENQ12999
HOGENOMQ12999
Homologs : HomoloGeneTSPAN31
Homology/Alignments : Family Browser (UCSC)TSPAN31
Gene fusions - Rearrangements
Fusion : MitelmanCTDSP2/TSPAN31 [12q14.1/12q14.1]  [t(12;12)(q14;q14)]  
Fusion PortalCTDSP2 12q14.1 TSPAN31 12q14.1 GBM
Fusion : QuiverTSPAN31
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN31
dbVarTSPAN31
ClinVarTSPAN31
1000_GenomesTSPAN31 
Exome Variant ServerTSPAN31
ExAC (Exome Aggregation Consortium)ENSG00000135452
GNOMAD BrowserENSG00000135452
Varsome BrowserTSPAN31
Genetic variants : HAPMAP6302
Genomic Variants (DGV)TSPAN31 [DGVbeta]
DECIPHERTSPAN31 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPAN31 
Mutations
ICGC Data PortalTSPAN31 
TCGA Data PortalTSPAN31 
Broad Tumor PortalTSPAN31
OASIS PortalTSPAN31 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN31  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPAN31
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPAN31
DgiDB (Drug Gene Interaction Database)TSPAN31
DoCM (Curated mutations)TSPAN31 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN31 (select a term)
intoGenTSPAN31
Cancer3DTSPAN31(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM181035   
Orphanet
DisGeNETTSPAN31
MedgenTSPAN31
Genetic Testing Registry TSPAN31
NextProtQ12999 [Medical]
TSGene6302
GENETestsTSPAN31
Target ValidationTSPAN31
Huge Navigator TSPAN31 [HugePedia]
snp3D : Map Gene to Disease6302
BioCentury BCIQTSPAN31
ClinGenTSPAN31
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6302
Chemical/Pharm GKB GenePA34949
Clinical trialTSPAN31
Miscellaneous
canSAR (ICR)TSPAN31 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPAN31
EVEXTSPAN31
GoPubMedTSPAN31
iHOPTSPAN31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:47:15 CET 2018
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