Atlas of Genetics and Cytogenetics in Oncology and Haematology


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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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TSPAN32 (tetraspanin 32)

Identity

Other namesART1
PHEMX
PHMX
TSSC6
HGNC (Hugo) TSPAN32
LocusID (NCBI) 10077
Location 11p15.5
Location_base_pair Starts at 2323243 and ends at 2339430 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TSPAN32   13410
Cards
Entrez_Gene (NCBI)TSPAN32  10077  tetraspanin 32
GeneCards (Weizmann)TSPAN32
Ensembl hg19 (Hinxton)ENSG00000064201 [Gene_View]  chr11:2323243-2339430 [Contig_View]  TSPAN32 [Vega]
Ensembl hg38 (Hinxton)ENSG00000064201 [Gene_View]  chr11:2323243-2339430 [Contig_View]  TSPAN32 [Vega]
ICGC DataPortalENSG00000064201
cBioPortalTSPAN32
AceView (NCBI)TSPAN32
Genatlas (Paris)TSPAN32
WikiGenes10077
SOURCE (Princeton)TSPAN32
Genomic and cartography
GoldenPath hg19 (UCSC)TSPAN32  -     chr11:2323243-2339430 +  11p15.5   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TSPAN32  -     11p15.5   [Description]    (hg38-Dec_2013)
EnsemblTSPAN32 - 11p15.5 [CytoView hg19]  TSPAN32 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBITSPAN32 [Mapview hg19]  TSPAN32 [Mapview hg38]
OMIM603853   
Gene and transcription
Genbank (Entrez)AA701395 AF125569 AF176070 AF176071 AK128812
RefSeq transcript (Entrez)NM_005705 NM_139022 NM_139024
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)TSPAN32
Cluster EST : UnigeneHs.271954 [ NCBI ]
CGAP (NCI)Hs.271954
Alternative Splicing : Fast-db (Paris)GSHG0004541
Alternative Splicing GalleryENSG00000064201
Gene ExpressionTSPAN32 [ NCBI-GEO ]     TSPAN32 [ SEEK ]   TSPAN32 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QS1 (Uniprot)
NextProtQ96QS1  [Medical]
With graphics : InterProQ96QS1
Splice isoforms : SwissVarQ96QS1 (Swissvar)
Domains : Interpro (EBI)CD81_LEL    Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_EC2   
Related proteins : CluSTrQ96QS1
Domain families : Pfam (Sanger)Tetraspannin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
DMDM Disease mutations10077
Blocks (Seattle)Q96QS1
Human Protein AtlasENSG00000064201
Peptide AtlasQ96QS1
HPRD04834
IPIIPI00102599   IPI00220778   IPI00220780   IPI00220777   IPI00385289   IPI00879119   IPI00220779   IPI00894295   
Protein Interaction databases
DIP (DOE-UCLA)Q96QS1
IntAct (EBI)Q96QS1
FunCoupENSG00000064201
BioGRIDTSPAN32
IntegromeDBTSPAN32
STRING (EMBL)TSPAN32
Ontologies - Pathways
QuickGOQ96QS1
Ontology : AmiGOmolecular_function  intracellular  cytoskeleton organization  integrin-mediated signaling pathway  cell-cell signaling  negative regulation of cell proliferation  cell surface  negative regulation of myeloid dendritic cell activation  defense response to protozoan  regulation of defense response to virus  integrin alphaIIb-beta3 complex  platelet aggregation  
Ontology : EGO-EBImolecular_function  intracellular  cytoskeleton organization  integrin-mediated signaling pathway  cell-cell signaling  negative regulation of cell proliferation  cell surface  negative regulation of myeloid dendritic cell activation  defense response to protozoan  regulation of defense response to virus  integrin alphaIIb-beta3 complex  platelet aggregation  
Protein Interaction DatabaseTSPAN32
DoCM (Curated mutations)TSPAN32
Wikipedia pathwaysTSPAN32
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerTSPAN32 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN32
dbVarTSPAN32
ClinVarTSPAN32
1000_GenomesTSPAN32 
Exome Variant ServerTSPAN32
SNP (GeneSNP Utah)TSPAN32
SNP : HGBaseTSPAN32
Genetic variants : HAPMAPTSPAN32
Genomic Variants (DGV)TSPAN32 [DGVbeta]
Mutations
ICGC Data PortalENSG00000064201 
Somatic Mutations in Cancer : COSMICTSPAN32 
CONAN: Copy Number AnalysisTSPAN32 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)11:2323243-2339430
Mutations and Diseases : HGMDTSPAN32
OMIM603853   
MedgenTSPAN32
NextProtQ96QS1 [Medical]
GENETestsTSPAN32
Disease Genetic AssociationTSPAN32
Huge Navigator TSPAN32 [HugePedia]  TSPAN32 [HugeCancerGEM]
snp3D : Map Gene to Disease10077
DGIdb (Drug Gene Interaction db)TSPAN32
General knowledge
Homologs : HomoloGeneTSPAN32
Homology/Alignments : Family Browser (UCSC)TSPAN32
Phylogenetic Trees/Animal Genes : TreeFamTSPAN32
Chemical/Protein Interactions : CTD10077
Chemical/Pharm GKB GenePA33257
Clinical trialTSPAN32
Cancer Resource (Charite)ENSG00000064201
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
CoreMineTSPAN32
GoPubMedTSPAN32
iHOPTSPAN32
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 17:43:56 CET 2015

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For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.