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TSPAN32 (tetraspanin 32)

Identity

Other namesART1
PHEMX
PHMX
TSSC6
HGNC (Hugo) TSPAN32
LocusID (NCBI) 10077
Location 11p15.5
Location_base_pair Starts at 2323243 and ends at 2339430 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TSPAN32   13410
Cards
Entrez_Gene (NCBI)TSPAN32  10077  tetraspanin 32
GeneCards (Weizmann)TSPAN32
Ensembl (Hinxton)ENSG00000064201 [Gene_View]  chr11:2323243-2339430 [Contig_View]  TSPAN32 [Vega]
ICGC DataPortalENSG00000064201
cBioPortalTSPAN32
AceView (NCBI)TSPAN32
Genatlas (Paris)TSPAN32
WikiGenes10077
SOURCE (Princeton)NM_005705 NM_139022 NM_139024
Genomic and cartography
GoldenPath (UCSC)TSPAN32  -  11p15.5   chr11:2323243-2339430 +  11p15.5   [Description]    (hg19-Feb_2009)
EnsemblTSPAN32 - 11p15.5 [CytoView]
Mapping of homologs : NCBITSPAN32 [Mapview]
OMIM603853   
Gene and transcription
Genbank (Entrez)AA701395 AF125569 AF176070 AF176071 AK128812
RefSeq transcript (Entrez)NM_005705 NM_139022 NM_139024
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NT_009237 NW_001838018 NW_004929378
Consensus coding sequences : CCDS (NCBI)TSPAN32
Cluster EST : UnigeneHs.271954 [ NCBI ]
CGAP (NCI)Hs.271954
Alternative Splicing : Fast-db (Paris)GSHG0004541
Alternative Splicing GalleryENSG00000064201
Gene ExpressionTSPAN32 [ NCBI-GEO ]     TSPAN32 [ SEEK ]   TSPAN32 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QS1 (Uniprot)
NextProtQ96QS1  [Medical]
With graphics : InterProQ96QS1
Splice isoforms : SwissVarQ96QS1 (Swissvar)
Domains : Interpro (EBI)CD81_LEL [organisation]   Tetraspanin [organisation]   Tetraspanin/Peripherin [organisation]   Tetraspanin_EC2 [organisation]  
Related proteins : CluSTrQ96QS1
Domain families : Pfam (Sanger)Tetraspannin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
DMDM Disease mutations10077
Blocks (Seattle)Q96QS1
Human Protein AtlasENSG00000064201 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ96QS1
HPRD04834
IPIIPI00102599   IPI00220778   IPI00220780   IPI00220777   IPI00385289   IPI00879119   IPI00220779   IPI00894295   
Protein Interaction databases
DIP (DOE-UCLA)Q96QS1
IntAct (EBI)Q96QS1
FunCoupENSG00000064201
BioGRIDTSPAN32
InParanoidQ96QS1
Interologous Interaction database Q96QS1
IntegromeDBTSPAN32
STRING (EMBL)TSPAN32
Ontologies - Pathways
Ontology : AmiGOmolecular_function  intracellular  cytoskeleton organization  integrin-mediated signaling pathway  cell-cell signaling  negative regulation of cell proliferation  cell surface  negative regulation of myeloid dendritic cell activation  defense response to protozoan  regulation of defense response to virus  integrin alphaIIb-beta3 complex  platelet aggregation  
Ontology : EGO-EBImolecular_function  intracellular  cytoskeleton organization  integrin-mediated signaling pathway  cell-cell signaling  negative regulation of cell proliferation  cell surface  negative regulation of myeloid dendritic cell activation  defense response to protozoan  regulation of defense response to virus  integrin alphaIIb-beta3 complex  platelet aggregation  
Protein Interaction DatabaseTSPAN32
Wikipedia pathwaysTSPAN32
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TSPAN32
snp3D : Map Gene to Disease10077
SNP (GeneSNP Utah)TSPAN32
SNP : HGBaseTSPAN32
Genetic variants : HAPMAPTSPAN32
Exome VariantTSPAN32
1000_GenomesTSPAN32 
ICGC programENSG00000064201 
Somatic Mutations in Cancer : COSMICTSPAN32 
CONAN: Copy Number AnalysisTSPAN32 
Mutations and Diseases : HGMDTSPAN32
Mutations and Diseases : intOGenTSPAN32
Genomic VariantsTSPAN32  TSPAN32 [DGVbeta]
dbVarTSPAN32
ClinVarTSPAN32
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM603853   
MedgenTSPAN32
GENETestsTSPAN32
Disease Genetic AssociationTSPAN32
Huge Navigator TSPAN32 [HugePedia]  TSPAN32 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneTSPAN32
Homology/Alignments : Family Browser (UCSC)TSPAN32
Phylogenetic Trees/Animal Genes : TreeFamTSPAN32
Chemical/Protein Interactions : CTD10077
Chemical/Pharm GKB GenePA33257
Clinical trialTSPAN32
Cancer Resource (Charite)ENSG00000064201
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
CoreMineTSPAN32
iHOPTSPAN32
OncoSearchTSPAN32
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 19:23:51 CEST 2014

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