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TSPAN33 (tetraspanin 33)

Identity

Alias_symbol (synonym)MGC50844
Penumbra
Other aliasPEN
PEN.
TSPAN-33
HGNC (Hugo) TSPAN33
LocusID (NCBI) 340348
Atlas_Id 56202
Location 7q32.1  [Link to chromosome band 7q32]
Location_base_pair Starts at 128784712 and ends at 128809535 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LARP4B (10p15.3) / TSPAN33 (7q32.1)PTPRZ1 (7q31.32) / TSPAN33 (7q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPAN33   28743
Cards
Entrez_Gene (NCBI)TSPAN33  340348  tetraspanin 33
AliasesPEN; PEN.; TSPAN-33
GeneCards (Weizmann)TSPAN33
Ensembl hg19 (Hinxton)ENSG00000158457 [Gene_View]  chr7:128784712-128809535 [Contig_View]  TSPAN33 [Vega]
Ensembl hg38 (Hinxton)ENSG00000158457 [Gene_View]  chr7:128784712-128809535 [Contig_View]  TSPAN33 [Vega]
ICGC DataPortalENSG00000158457
TCGA cBioPortalTSPAN33
AceView (NCBI)TSPAN33
Genatlas (Paris)TSPAN33
WikiGenes340348
SOURCE (Princeton)TSPAN33
Genetics Home Reference (NIH)TSPAN33
Genomic and cartography
GoldenPath hg19 (UCSC)TSPAN33  -     chr7:128784712-128809535 +  7q32.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TSPAN33  -     7q32.1   [Description]    (hg38-Dec_2013)
EnsemblTSPAN33 - 7q32.1 [CytoView hg19]  TSPAN33 - 7q32.1 [CytoView hg38]
Mapping of homologs : NCBITSPAN33 [Mapview hg19]  TSPAN33 [Mapview hg38]
OMIM610120   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_178562
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPAN33
Cluster EST : UnigeneHs.27267 [ NCBI ]
CGAP (NCI)Hs.27267
Alternative Splicing GalleryENSG00000158457
Gene ExpressionTSPAN33 [ NCBI-GEO ]   TSPAN33 [ EBI - ARRAY_EXPRESS ]   TSPAN33 [ SEEK ]   TSPAN33 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN33 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340348
GTEX Portal (Tissue expression)TSPAN33
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UF1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UF1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UF1
Splice isoforms : SwissVarQ86UF1
PhosPhoSitePlusQ86UF1
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_EC2   
Domain families : Pfam (Sanger)Tetraspannin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN33
DMDM Disease mutations340348
Blocks (Seattle)TSPAN33
SuperfamilyQ86UF1
Human Protein AtlasENSG00000158457
Peptide AtlasQ86UF1
HPRD14669
IPIIPI00237925   
Protein Interaction databases
DIP (DOE-UCLA)Q86UF1
IntAct (EBI)Q86UF1
FunCoupENSG00000158457
BioGRIDTSPAN33
STRING (EMBL)TSPAN33
ZODIACTSPAN33
Ontologies - Pathways
QuickGOQ86UF1
Ontology : AmiGOplasma membrane  integral component of plasma membrane  cell surface receptor signaling pathway  cell surface  enzyme binding  positive regulation of Notch signaling pathway  protein maturation  establishment of protein localization to plasma membrane  tetraspanin-enriched microdomain  
Ontology : EGO-EBIplasma membrane  integral component of plasma membrane  cell surface receptor signaling pathway  cell surface  enzyme binding  positive regulation of Notch signaling pathway  protein maturation  establishment of protein localization to plasma membrane  tetraspanin-enriched microdomain  
NDEx NetworkTSPAN33
Atlas of Cancer Signalling NetworkTSPAN33
Wikipedia pathwaysTSPAN33
Orthology - Evolution
OrthoDB340348
GeneTree (enSembl)ENSG00000158457
Phylogenetic Trees/Animal Genes : TreeFamTSPAN33
HOVERGENQ86UF1
HOGENOMQ86UF1
Homologs : HomoloGeneTSPAN33
Homology/Alignments : Family Browser (UCSC)TSPAN33
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN33 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN33
dbVarTSPAN33
ClinVarTSPAN33
1000_GenomesTSPAN33 
Exome Variant ServerTSPAN33
ExAC (Exome Aggregation Consortium)TSPAN33 (select the gene name)
Genetic variants : HAPMAP340348
Genomic Variants (DGV)TSPAN33 [DGVbeta]
DECIPHER (Syndromes)7:128784712-128809535  ENSG00000158457
CONAN: Copy Number AnalysisTSPAN33 
Mutations
ICGC Data PortalTSPAN33 
TCGA Data PortalTSPAN33 
Broad Tumor PortalTSPAN33
OASIS PortalTSPAN33 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN33  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPAN33
BioMutasearch TSPAN33
DgiDB (Drug Gene Interaction Database)TSPAN33
DoCM (Curated mutations)TSPAN33 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN33 (select a term)
intoGenTSPAN33
Cancer3DTSPAN33(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610120   
Orphanet
MedgenTSPAN33
Genetic Testing Registry TSPAN33
NextProtQ86UF1 [Medical]
TSGene340348
GENETestsTSPAN33
Huge Navigator TSPAN33 [HugePedia]
snp3D : Map Gene to Disease340348
BioCentury BCIQTSPAN33
ClinGenTSPAN33
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340348
Chemical/Pharm GKB GenePA142670690
Clinical trialTSPAN33
Miscellaneous
canSAR (ICR)TSPAN33 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPAN33
EVEXTSPAN33
GoPubMedTSPAN33
iHOPTSPAN33
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:32:37 CET 2017

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