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TSPAN33 (tetraspanin 33)

Identity

Alias (NCBI)PEN
PEN.
TSPAN-33
HGNC (Hugo) TSPAN33
HGNC Alias symbMGC50844
Penumbra
LocusID (NCBI) 340348
Atlas_Id 56202
Location 7q32.1  [Link to chromosome band 7q32]
Location_base_pair Starts at 129144707 and ends at 129169696 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LARP4B (10p15.3) / TSPAN33 (7q32.1)PTPRZ1 (7q31.32) / TSPAN33 (7q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSPAN33   28743
Cards
Entrez_Gene (NCBI)TSPAN33    tetraspanin 33
AliasesPEN; PEN.; TSPAN-33
GeneCards (Weizmann)TSPAN33
Ensembl hg19 (Hinxton)ENSG00000158457 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158457 [Gene_View]  ENSG00000158457 [Sequence]  chr7:129144707-129169696 [Contig_View]  TSPAN33 [Vega]
ICGC DataPortalENSG00000158457
TCGA cBioPortalTSPAN33
AceView (NCBI)TSPAN33
Genatlas (Paris)TSPAN33
SOURCE (Princeton)TSPAN33
Genetics Home Reference (NIH)TSPAN33
Genomic and cartography
GoldenPath hg38 (UCSC)TSPAN33  -     chr7:129144707-129169696 +  7q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPAN33  -     7q32.1   [Description]    (hg19-Feb_2009)
GoldenPathTSPAN33 - 7q32.1 [CytoView hg19]  TSPAN33 - 7q32.1 [CytoView hg38]
ImmunoBaseENSG00000158457
Genome Data Viewer NCBITSPAN33 [Mapview hg19]  
OMIM610120   
Gene and transcription
Genbank (Entrez)AF276891 AK000208 AW089489 AY236849 BC044244
RefSeq transcript (Entrez)NM_178562
Consensus coding sequences : CCDS (NCBI)TSPAN33
Gene ExpressionTSPAN33 [ NCBI-GEO ]   TSPAN33 [ EBI - ARRAY_EXPRESS ]   TSPAN33 [ SEEK ]   TSPAN33 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN33 [ Firebrowse - Broad ]
GenevisibleExpression of TSPAN33 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340348
GTEX Portal (Tissue expression)TSPAN33
Human Protein AtlasENSG00000158457-TSPAN33 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UF1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UF1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UF1
PhosPhoSitePlusQ86UF1
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_EC2_sf   
Domain families : Pfam (Sanger)Tetraspanin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN33
SuperfamilyQ86UF1
AlphaFold pdb e-kbQ86UF1   
Human Protein Atlas [tissue]ENSG00000158457-TSPAN33 [tissue]
HPRD14669
Protein Interaction databases
DIP (DOE-UCLA)Q86UF1
IntAct (EBI)Q86UF1
BioGRIDTSPAN33
STRING (EMBL)TSPAN33
ZODIACTSPAN33
Ontologies - Pathways
QuickGOQ86UF1
Ontology : AmiGOprotein binding  endoplasmic reticulum lumen  plasma membrane  plasma membrane  integral component of plasma membrane  adherens junction  cell surface  enzyme binding  pore complex  pore complex assembly  protein maturation  protein maturation  protein localization to plasma membrane  protein localization to plasma membrane  tetraspanin-enriched microdomain  amyloid fibril formation  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum lumen  plasma membrane  plasma membrane  integral component of plasma membrane  adherens junction  cell surface  enzyme binding  pore complex  pore complex assembly  protein maturation  protein maturation  protein localization to plasma membrane  protein localization to plasma membrane  tetraspanin-enriched microdomain  amyloid fibril formation  
NDEx NetworkTSPAN33
Atlas of Cancer Signalling NetworkTSPAN33
Wikipedia pathwaysTSPAN33
Orthology - Evolution
OrthoDB340348
GeneTree (enSembl)ENSG00000158457
Phylogenetic Trees/Animal Genes : TreeFamTSPAN33
Homologs : HomoloGeneTSPAN33
Homology/Alignments : Family Browser (UCSC)TSPAN33
Gene fusions - Rearrangements
Fusion : QuiverTSPAN33
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN33 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN33
dbVarTSPAN33
ClinVarTSPAN33
MonarchTSPAN33
1000_GenomesTSPAN33 
Exome Variant ServerTSPAN33
GNOMAD BrowserENSG00000158457
Varsome BrowserTSPAN33
ACMGTSPAN33 variants
VarityQ86UF1
Genomic Variants (DGV)TSPAN33 [DGVbeta]
DECIPHERTSPAN33 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPAN33 
Mutations
ICGC Data PortalTSPAN33 
TCGA Data PortalTSPAN33 
Broad Tumor PortalTSPAN33
OASIS PortalTSPAN33 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN33  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSPAN33
Mutations and Diseases : HGMDTSPAN33
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSPAN33
DgiDB (Drug Gene Interaction Database)TSPAN33
DoCM (Curated mutations)TSPAN33
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN33
Cancer3DTSPAN33
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610120   
Orphanet
DisGeNETTSPAN33
MedgenTSPAN33
Genetic Testing Registry TSPAN33
NextProtQ86UF1 [Medical]
GENETestsTSPAN33
Target ValidationTSPAN33
Huge Navigator TSPAN33 [HugePedia]
ClinGenTSPAN33
Clinical trials, drugs, therapy
MyCancerGenomeTSPAN33
Protein Interactions : CTDTSPAN33
Pharm GKB GenePA142670690
PharosQ86UF1
Clinical trialTSPAN33
Miscellaneous
canSAR (ICR)TSPAN33
HarmonizomeTSPAN33
DataMed IndexTSPAN33
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSPAN33
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:40 CEST 2021

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