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TSPAN7 (tetraspanin 7)

Identity

Alias_namesMXS1
TM4SF2
MRX58
transmembrane 4 superfamily member 2
mental retardation, X-linked 58
Alias_symbol (synonym)DXS1692E
TALLA-1
A15
CD231
Other aliasCCG-B7
TM4SF2b
HGNC (Hugo) TSPAN7
LocusID (NCBI) 7102
Atlas_Id 42584
Location Xp11.4  [Link to chromosome band Xp11]
Location_base_pair Starts at 38561478 and ends at 38688918 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PRRG1 (Xp21.1) / TSPAN7 (Xp11.4)SYP (Xp11.23) / TSPAN7 (Xp11.4)TMSB4X (Xp22.2) / TSPAN7 (Xp11.4)
TSPAN7 (Xp11.4) / ADGRA3 (4p15.2)TSPAN7 (Xp11.4) / TSPAN7 (Xp11.4)TSSC1 (2p25.3) / TSPAN7 (Xp11.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPAN7   11854
Cards
Entrez_Gene (NCBI)TSPAN7  7102  tetraspanin 7
AliasesA15; CCG-B7; CD231; DXS1692E; 
MRX58; MXS1; TALLA-1; TM4SF2; TM4SF2b
GeneCards (Weizmann)TSPAN7
Ensembl hg19 (Hinxton)ENSG00000156298 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156298 [Gene_View]  chrX:38561478-38688918 [Contig_View]  TSPAN7 [Vega]
ICGC DataPortalENSG00000156298
TCGA cBioPortalTSPAN7
AceView (NCBI)TSPAN7
Genatlas (Paris)TSPAN7
WikiGenes7102
SOURCE (Princeton)TSPAN7
Genetics Home Reference (NIH)TSPAN7
Genomic and cartography
GoldenPath hg38 (UCSC)TSPAN7  -     chrX:38561478-38688918 +  Xp11.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPAN7  -     Xp11.4   [Description]    (hg19-Feb_2009)
EnsemblTSPAN7 - Xp11.4 [CytoView hg19]  TSPAN7 - Xp11.4 [CytoView hg38]
Mapping of homologs : NCBITSPAN7 [Mapview hg19]  TSPAN7 [Mapview hg38]
OMIM300096   300210   
Gene and transcription
Genbank (Entrez)AA757687 AB062057 AB062057 AB102665 AK293178
RefSeq transcript (Entrez)NM_004615
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPAN7
Cluster EST : UnigeneHs.441664 [ NCBI ]
CGAP (NCI)Hs.441664
Alternative Splicing GalleryENSG00000156298
Gene ExpressionTSPAN7 [ NCBI-GEO ]   TSPAN7 [ EBI - ARRAY_EXPRESS ]   TSPAN7 [ SEEK ]   TSPAN7 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7102
GTEX Portal (Tissue expression)TSPAN7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP41732   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP41732  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP41732
Splice isoforms : SwissVarP41732
PhosPhoSitePlusP41732
Domaine pattern : Prosite (Expaxy)TM4_1 (PS00421)   
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_CS    Tetraspanin_EC2   
Domain families : Pfam (Sanger)Tetraspannin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN7
DMDM Disease mutations7102
Blocks (Seattle)TSPAN7
SuperfamilyP41732
Human Protein AtlasENSG00000156298
Peptide AtlasP41732
HPRD02107
IPIIPI00941552   IPI00909234   IPI01010357   IPI00945150   IPI00945013   IPI00016600   IPI00947323   
Protein Interaction databases
DIP (DOE-UCLA)P41732
IntAct (EBI)P41732
FunCoupENSG00000156298
BioGRIDTSPAN7
STRING (EMBL)TSPAN7
ZODIACTSPAN7
Ontologies - Pathways
QuickGOP41732
Ontology : AmiGOintegral component of plasma membrane  cell surface receptor signaling pathway  viral process  
Ontology : EGO-EBIintegral component of plasma membrane  cell surface receptor signaling pathway  viral process  
Pathways : KEGGTranscriptional misregulation in cancer   
NDEx NetworkTSPAN7
Atlas of Cancer Signalling NetworkTSPAN7
Wikipedia pathwaysTSPAN7
Orthology - Evolution
OrthoDB7102
GeneTree (enSembl)ENSG00000156298
Phylogenetic Trees/Animal Genes : TreeFamTSPAN7
HOVERGENP41732
HOGENOMP41732
Homologs : HomoloGeneTSPAN7
Homology/Alignments : Family Browser (UCSC)TSPAN7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN7
dbVarTSPAN7
ClinVarTSPAN7
1000_GenomesTSPAN7 
Exome Variant ServerTSPAN7
ExAC (Exome Aggregation Consortium)TSPAN7 (select the gene name)
Genetic variants : HAPMAP7102
Genomic Variants (DGV)TSPAN7 [DGVbeta]
DECIPHERTSPAN7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPAN7 
Mutations
ICGC Data PortalTSPAN7 
TCGA Data PortalTSPAN7 
Broad Tumor PortalTSPAN7
OASIS PortalTSPAN7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPAN7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPAN7
DgiDB (Drug Gene Interaction Database)TSPAN7
DoCM (Curated mutations)TSPAN7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN7 (select a term)
intoGenTSPAN7
Cancer3DTSPAN7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300096    300210   
Orphanet3256   
MedgenTSPAN7
Genetic Testing Registry TSPAN7
NextProtP41732 [Medical]
TSGene7102
GENETestsTSPAN7
Target ValidationTSPAN7
Huge Navigator TSPAN7 [HugePedia]
snp3D : Map Gene to Disease7102
BioCentury BCIQTSPAN7
ClinGenTSPAN7 (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7102
Chemical/Pharm GKB GenePA36555
Clinical trialTSPAN7
Miscellaneous
canSAR (ICR)TSPAN7 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPAN7
EVEXTSPAN7
GoPubMedTSPAN7
iHOPTSPAN7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:17:53 CEST 2017

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