Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TSPAN9 (tetraspanin 9)

Identity

Other aliasNET-5
NET5
PP1057
HGNC (Hugo) TSPAN9
LocusID (NCBI) 10867
Atlas_Id 56804
Location 12p13.33  [Link to chromosome band 12p13]
Location_base_pair Starts at 3077355 and ends at 3286564 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DDX18 (2q14.1) / TSPAN9 (12p13.33)RGS4 (1q23.3) / TSPAN9 (12p13.33)TIGAR (12p13.32) / TSPAN9 (12p13.33)
TNNT1 (19q13.42) / TSPAN9 (12p13.33)TSPAN9 (12p13.33) / C14orf37 (14q23.1)TSPAN9 (12p13.33) / CACNA1C (12p13.33)
TSPAN9 (12p13.33) / CACYBP (1q25.1)TSPAN9 (12p13.33) / MAML1 (5q35.3)TSPAN9 (12p13.33) / PRH1 (12p13.2)
TSPAN9 (12p13.33) / PRR4 (12p13.2)TSPAN9 (12p13.33) / TNNT1 (19q13.42)TSPAN9 (12p13.33) / TSPAN9 (12p13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPAN9   21640
Cards
Entrez_Gene (NCBI)TSPAN9  10867  tetraspanin 9
AliasesNET-5; NET5; PP1057
GeneCards (Weizmann)TSPAN9
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:3077355-3286564 [Contig_View]  TSPAN9 [Vega]
TCGA cBioPortalTSPAN9
AceView (NCBI)TSPAN9
Genatlas (Paris)TSPAN9
WikiGenes10867
SOURCE (Princeton)TSPAN9
Genetics Home Reference (NIH)TSPAN9
Genomic and cartography
GoldenPath hg38 (UCSC)TSPAN9  -     chr12:3077355-3286564 +  12p13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPAN9  -     12p13.33   [Description]    (hg19-Feb_2009)
EnsemblTSPAN9 - 12p13.33 [CytoView hg19]  TSPAN9 - 12p13.33 [CytoView hg38]
Mapping of homologs : NCBITSPAN9 [Mapview hg19]  TSPAN9 [Mapview hg38]
OMIM613137   
Gene and transcription
Genbank (Entrez)AF089749 AF217967 AK027366 AK223179 AW025505
RefSeq transcript (Entrez)NM_001168320 NM_006675
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPAN9
Cluster EST : UnigeneHs.504517 [ NCBI ]
CGAP (NCI)Hs.504517
Gene ExpressionTSPAN9 [ NCBI-GEO ]   TSPAN9 [ EBI - ARRAY_EXPRESS ]   TSPAN9 [ SEEK ]   TSPAN9 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10867
GTEX Portal (Tissue expression)TSPAN9
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75954   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75954  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75954
Splice isoforms : SwissVarO75954
PhosPhoSitePlusO75954
Domaine pattern : Prosite (Expaxy)TM4_1 (PS00421)   
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_CS    Tetraspanin_EC2   
Domain families : Pfam (Sanger)Tetraspannin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)TSPAN9
DMDM Disease mutations10867
Blocks (Seattle)TSPAN9
SuperfamilyO75954
Peptide AtlasO75954
IPIIPI00027437   IPI00010401   IPI00880170   IPI01011149   
Protein Interaction databases
DIP (DOE-UCLA)O75954
IntAct (EBI)O75954
BioGRIDTSPAN9
STRING (EMBL)TSPAN9
ZODIACTSPAN9
Ontologies - Pathways
QuickGOO75954
Ontology : AmiGOmolecular_function  plasma membrane  integral component of plasma membrane  focal adhesion  cell surface receptor signaling pathway  biological_process  tetraspanin-enriched microdomain  
Ontology : EGO-EBImolecular_function  plasma membrane  integral component of plasma membrane  focal adhesion  cell surface receptor signaling pathway  biological_process  tetraspanin-enriched microdomain  
NDEx NetworkTSPAN9
Atlas of Cancer Signalling NetworkTSPAN9
Wikipedia pathwaysTSPAN9
Orthology - Evolution
OrthoDB10867
Phylogenetic Trees/Animal Genes : TreeFamTSPAN9
HOVERGENO75954
HOGENOMO75954
Homologs : HomoloGeneTSPAN9
Homology/Alignments : Family Browser (UCSC)TSPAN9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPAN9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPAN9
dbVarTSPAN9
ClinVarTSPAN9
1000_GenomesTSPAN9 
Exome Variant ServerTSPAN9
ExAC (Exome Aggregation Consortium)TSPAN9 (select the gene name)
Genetic variants : HAPMAP10867
Genomic Variants (DGV)TSPAN9 [DGVbeta]
DECIPHERTSPAN9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPAN9 
Mutations
ICGC Data PortalTSPAN9 
TCGA Data PortalTSPAN9 
Broad Tumor PortalTSPAN9
OASIS PortalTSPAN9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPAN9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPAN9
BioMutasearch TSPAN9
DgiDB (Drug Gene Interaction Database)TSPAN9
DoCM (Curated mutations)TSPAN9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPAN9 (select a term)
intoGenTSPAN9
Cancer3DTSPAN9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613137   
Orphanet
MedgenTSPAN9
Genetic Testing Registry TSPAN9
NextProtO75954 [Medical]
TSGene10867
GENETestsTSPAN9
Target ValidationTSPAN9
Huge Navigator TSPAN9 [HugePedia]
snp3D : Map Gene to Disease10867
BioCentury BCIQTSPAN9
ClinGenTSPAN9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10867
Chemical/Pharm GKB GenePA142670694
Clinical trialTSPAN9
Miscellaneous
canSAR (ICR)TSPAN9 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPAN9
EVEXTSPAN9
GoPubMedTSPAN9
iHOPTSPAN9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 13:01:10 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.