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TSPEAR-AS2 (TSPEAR antisense RNA 2)

Identity

Alias (NCBI)C21orf90
HGNC (Hugo) TSPEAR-AS2
HGNC Previous nameC21orf90
HGNC Previous namechromosome 21 open reading frame 90
LocusID (NCBI) 114043
Atlas_Id 75244
Location 21q22.3  [Link to chromosome band 21q22]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TSPEAR-AS2 (21q22.3) / GABRA3 (Xq28)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSPEAR-AS2   16428
Cards
Entrez_Gene (NCBI)TSPEAR-AS2    TSPEAR antisense RNA 2
AliasesC21orf90
GeneCards (Weizmann)TSPEAR-AS2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  - [Contig_View]  TSPEAR-AS2 [Vega]
TCGA cBioPortalTSPEAR-AS2
AceView (NCBI)TSPEAR-AS2
Genatlas (Paris)TSPEAR-AS2
SOURCE (Princeton)TSPEAR-AS2
Genetics Home Reference (NIH)TSPEAR-AS2
Genomic and cartography
GoldenPath hg38 (UCSC)TSPEAR-AS2  -  
GoldenPath hg19 (UCSC)TSPEAR-AS2  -  
GoldenPathTSPEAR-AS2 - [CytoView hg19]  TSPEAR-AS2 - [CytoView hg38]
Genome Data Viewer NCBITSPEAR-AS2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF426269 AF426270 BC016690 BC064517 BC101650
RefSeq transcript (Entrez)NM_153204
Consensus coding sequences : CCDS (NCBI)TSPEAR-AS2
Gene ExpressionTSPEAR-AS2 [ NCBI-GEO ]   TSPEAR-AS2 [ EBI - ARRAY_EXPRESS ]   TSPEAR-AS2 [ SEEK ]   TSPEAR-AS2 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPEAR-AS2 [ Firebrowse - Broad ]
GenevisibleExpression of TSPEAR-AS2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114043
GTEX Portal (Tissue expression)TSPEAR-AS2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59090   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59090  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59090
PhosPhoSitePlusP59090
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TSPEAR-AS2
SuperfamilyP59090
AlphaFold pdb e-kbP59090   
HPRD10775
Protein Interaction databases
DIP (DOE-UCLA)P59090
IntAct (EBI)P59090
BioGRIDTSPEAR-AS2
STRING (EMBL)TSPEAR-AS2
ZODIACTSPEAR-AS2
Ontologies - Pathways
QuickGOP59090
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTSPEAR-AS2
Atlas of Cancer Signalling NetworkTSPEAR-AS2
Wikipedia pathwaysTSPEAR-AS2
Orthology - Evolution
OrthoDB114043
Phylogenetic Trees/Animal Genes : TreeFamTSPEAR-AS2
Homologs : HomoloGeneTSPEAR-AS2
Homology/Alignments : Family Browser (UCSC)TSPEAR-AS2
Gene fusions - Rearrangements
Fusion : QuiverTSPEAR-AS2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPEAR-AS2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPEAR-AS2
dbVarTSPEAR-AS2
ClinVarTSPEAR-AS2
MonarchTSPEAR-AS2
1000_GenomesTSPEAR-AS2 
Exome Variant ServerTSPEAR-AS2
Varsome BrowserTSPEAR-AS2
ACMGTSPEAR-AS2 variants
VarityP59090
Genomic Variants (DGV)TSPEAR-AS2 [DGVbeta]
DECIPHERTSPEAR-AS2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPEAR-AS2 
Mutations
ICGC Data PortalTSPEAR-AS2 
TCGA Data PortalTSPEAR-AS2 
Broad Tumor PortalTSPEAR-AS2
OASIS PortalTSPEAR-AS2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTSPEAR-AS2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSPEAR-AS2
DgiDB (Drug Gene Interaction Database)TSPEAR-AS2
DoCM (Curated mutations)TSPEAR-AS2
CIViC (Clinical Interpretations of Variants in Cancer)TSPEAR-AS2
Cancer3DTSPEAR-AS2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTSPEAR-AS2
MedgenTSPEAR-AS2
Genetic Testing Registry TSPEAR-AS2
NextProtP59090 [Medical]
GENETestsTSPEAR-AS2
Target ValidationTSPEAR-AS2
Huge Navigator TSPEAR-AS2 [HugePedia]
ClinGenTSPEAR-AS2
Clinical trials, drugs, therapy
MyCancerGenomeTSPEAR-AS2
Protein Interactions : CTDTSPEAR-AS2
Pharm GKB GenePA25878
PharosP59090
Clinical trialTSPEAR-AS2
Miscellaneous
canSAR (ICR)TSPEAR-AS2
HarmonizomeTSPEAR-AS2
DataMed IndexTSPEAR-AS2
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSPEAR-AS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:09 CEST 2021

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