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TSPEAR-AS2 (TSPEAR antisense RNA 2)

Identity

Alias_namesC21orf90
chromosome 21 open reading frame 90
Other alias
HGNC (Hugo) TSPEAR-AS2
LocusID (NCBI) 114043
Atlas_Id 75244
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 45937098 and ends at 45938639 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TSPEAR-AS2 (21q22.3) / GABRA3 (Xq28)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPEAR-AS2   16428
Cards
Entrez_Gene (NCBI)TSPEAR-AS2  114043  TSPEAR antisense RNA 2
AliasesC21orf90
GeneCards (Weizmann)TSPEAR-AS2
Ensembl hg19 (Hinxton) [Gene_View]  chr21:45937098-45938639 [Contig_View]  TSPEAR-AS2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:45937098-45938639 [Contig_View]  TSPEAR-AS2 [Vega]
TCGA cBioPortalTSPEAR-AS2
AceView (NCBI)TSPEAR-AS2
Genatlas (Paris)TSPEAR-AS2
WikiGenes114043
SOURCE (Princeton)TSPEAR-AS2
Genetics Home Reference (NIH)TSPEAR-AS2
Genomic and cartography
GoldenPath hg19 (UCSC)TSPEAR-AS2  -     chr21:45937098-45938639 +  21q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TSPEAR-AS2  -     21q22.3   [Description]    (hg38-Dec_2013)
EnsemblTSPEAR-AS2 - 21q22.3 [CytoView hg19]  TSPEAR-AS2 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBITSPEAR-AS2 [Mapview hg19]  TSPEAR-AS2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF426269 AF426270 BC016690 BC064517 BC101650
RefSeq transcript (Entrez)NM_153204
RefSeq genomic (Entrez)NC_000021 NC_018932 NG_033806 NT_011512 NW_004929427
Consensus coding sequences : CCDS (NCBI)TSPEAR-AS2
Cluster EST : UnigeneHs.592163 [ NCBI ]
CGAP (NCI)Hs.592163
Gene ExpressionTSPEAR-AS2 [ NCBI-GEO ]   TSPEAR-AS2 [ EBI - ARRAY_EXPRESS ]   TSPEAR-AS2 [ SEEK ]   TSPEAR-AS2 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPEAR-AS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114043
GTEX Portal (Tissue expression)TSPEAR-AS2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59090   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59090  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59090
Splice isoforms : SwissVarP59090
PhosPhoSitePlusP59090
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TSPEAR-AS2
DMDM Disease mutations114043
Blocks (Seattle)TSPEAR-AS2
SuperfamilyP59090
Peptide AtlasP59090
HPRD10775
IPIIPI00171428   IPI00219882   
Protein Interaction databases
DIP (DOE-UCLA)P59090
IntAct (EBI)P59090
BioGRIDTSPEAR-AS2
STRING (EMBL)TSPEAR-AS2
ZODIACTSPEAR-AS2
Ontologies - Pathways
QuickGOP59090
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTSPEAR-AS2
Atlas of Cancer Signalling NetworkTSPEAR-AS2
Wikipedia pathwaysTSPEAR-AS2
Orthology - Evolution
OrthoDB114043
Phylogenetic Trees/Animal Genes : TreeFamTSPEAR-AS2
HOVERGENP59090
HOGENOMP59090
Homologs : HomoloGeneTSPEAR-AS2
Homology/Alignments : Family Browser (UCSC)TSPEAR-AS2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPEAR-AS2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPEAR-AS2
dbVarTSPEAR-AS2
ClinVarTSPEAR-AS2
1000_GenomesTSPEAR-AS2 
Exome Variant ServerTSPEAR-AS2
ExAC (Exome Aggregation Consortium)TSPEAR-AS2 (select the gene name)
Genetic variants : HAPMAP114043
Genomic Variants (DGV)TSPEAR-AS2 [DGVbeta]
DECIPHER (Syndromes)21:45937098-45938639  
CONAN: Copy Number AnalysisTSPEAR-AS2 
Mutations
ICGC Data PortalTSPEAR-AS2 
TCGA Data PortalTSPEAR-AS2 
Broad Tumor PortalTSPEAR-AS2
OASIS PortalTSPEAR-AS2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTSPEAR-AS2
BioMutasearch TSPEAR-AS2
DgiDB (Drug Gene Interaction Database)TSPEAR-AS2
DoCM (Curated mutations)TSPEAR-AS2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPEAR-AS2 (select a term)
intoGenTSPEAR-AS2
Cancer3DTSPEAR-AS2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTSPEAR-AS2
Genetic Testing Registry TSPEAR-AS2
NextProtP59090 [Medical]
TSGene114043
GENETestsTSPEAR-AS2
Huge Navigator TSPEAR-AS2 [HugePedia]
snp3D : Map Gene to Disease114043
BioCentury BCIQTSPEAR-AS2
ClinGenTSPEAR-AS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114043
Chemical/Pharm GKB GenePA25878
Clinical trialTSPEAR-AS2
Miscellaneous
canSAR (ICR)TSPEAR-AS2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPEAR-AS2
EVEXTSPEAR-AS2
GoPubMedTSPEAR-AS2
iHOPTSPEAR-AS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:00 CET 2017

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