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TSPO2 (translocator protein 2)

Identity

Alias_namesBZRPL1
benzodiazapine receptor (peripheral)-like 1
Alias_symbol (synonym)dJ34B21.2
Other alias
HGNC (Hugo) TSPO2
LocusID (NCBI) 222642
Atlas_Id 75245
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 41042498 and ends at 41044337 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPO2   21256
Cards
Entrez_Gene (NCBI)TSPO2  222642  translocator protein 2
AliasesBZRPL1
GeneCards (Weizmann)TSPO2
Ensembl hg19 (Hinxton)ENSG00000112212 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112212 [Gene_View]  ENSG00000112212 [Sequence]  chr6:41042498-41044337 [Contig_View]  TSPO2 [Vega]
ICGC DataPortalENSG00000112212
TCGA cBioPortalTSPO2
AceView (NCBI)TSPO2
Genatlas (Paris)TSPO2
WikiGenes222642
SOURCE (Princeton)TSPO2
Genetics Home Reference (NIH)TSPO2
Genomic and cartography
GoldenPath hg38 (UCSC)TSPO2  -     chr6:41042498-41044337 +  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPO2  -     6p21.1   [Description]    (hg19-Feb_2009)
EnsemblTSPO2 - 6p21.1 [CytoView hg19]  TSPO2 - 6p21.1 [CytoView hg38]
Mapping of homologs : NCBITSPO2 [Mapview hg19]  TSPO2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI052224 BC104440 BC104441 BC137560 BC137565
RefSeq transcript (Entrez)NM_001010873 NM_001159726
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPO2
Cluster EST : UnigeneHs.357392 [ NCBI ]
CGAP (NCI)Hs.357392
Alternative Splicing GalleryENSG00000112212
Gene ExpressionTSPO2 [ NCBI-GEO ]   TSPO2 [ EBI - ARRAY_EXPRESS ]   TSPO2 [ SEEK ]   TSPO2 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPO2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)222642
GTEX Portal (Tissue expression)TSPO2
Human Protein AtlasENSG00000112212-TSPO2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TGU0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TGU0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TGU0
Splice isoforms : SwissVarQ5TGU0
PhosPhoSitePlusQ5TGU0
Domains : Interpro (EBI)TspO_MBR   
Domain families : Pfam (Sanger)TspO_MBR (PF03073)   
Domain families : Pfam (NCBI)pfam03073   
Conserved Domain (NCBI)TSPO2
DMDM Disease mutations222642
Blocks (Seattle)TSPO2
SuperfamilyQ5TGU0
Human Protein Atlas [tissue]ENSG00000112212-TSPO2 [tissue]
Peptide AtlasQ5TGU0
HPRD16569
IPIIPI00174799   IPI00651696   
Protein Interaction databases
DIP (DOE-UCLA)Q5TGU0
IntAct (EBI)Q5TGU0
FunCoupENSG00000112212
BioGRIDTSPO2
STRING (EMBL)TSPO2
ZODIACTSPO2
Ontologies - Pathways
QuickGOQ5TGU0
Ontology : AmiGOendoplasmic reticulum  endoplasmic reticulum membrane  transport  cholesterol binding  integral component of membrane  
Ontology : EGO-EBIendoplasmic reticulum  endoplasmic reticulum membrane  transport  cholesterol binding  integral component of membrane  
NDEx NetworkTSPO2
Atlas of Cancer Signalling NetworkTSPO2
Wikipedia pathwaysTSPO2
Orthology - Evolution
OrthoDB222642
GeneTree (enSembl)ENSG00000112212
Phylogenetic Trees/Animal Genes : TreeFamTSPO2
HOVERGENQ5TGU0
HOGENOMQ5TGU0
Homologs : HomoloGeneTSPO2
Homology/Alignments : Family Browser (UCSC)TSPO2
Gene fusions - Rearrangements
Fusion : QuiverTSPO2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPO2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPO2
dbVarTSPO2
ClinVarTSPO2
1000_GenomesTSPO2 
Exome Variant ServerTSPO2
ExAC (Exome Aggregation Consortium)ENSG00000112212
GNOMAD BrowserENSG00000112212
Varsome BrowserTSPO2
Genetic variants : HAPMAP222642
Genomic Variants (DGV)TSPO2 [DGVbeta]
DECIPHERTSPO2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPO2 
Mutations
ICGC Data PortalTSPO2 
TCGA Data PortalTSPO2 
Broad Tumor PortalTSPO2
OASIS PortalTSPO2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPO2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPO2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPO2
DgiDB (Drug Gene Interaction Database)TSPO2
DoCM (Curated mutations)TSPO2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPO2 (select a term)
intoGenTSPO2
Cancer3DTSPO2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTSPO2
MedgenTSPO2
Genetic Testing Registry TSPO2
NextProtQ5TGU0 [Medical]
TSGene222642
GENETestsTSPO2
Target ValidationTSPO2
Huge Navigator TSPO2 [HugePedia]
snp3D : Map Gene to Disease222642
BioCentury BCIQTSPO2
ClinGenTSPO2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD222642
Chemical/Pharm GKB GenePA165618396
Clinical trialTSPO2
Miscellaneous
canSAR (ICR)TSPO2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPO2
EVEXTSPO2
GoPubMedTSPO2
iHOPTSPO2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:36:54 CEST 2018

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