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TSPOAP1-AS1 (TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1)

Identity

Alias (NCBI)BZRAP1-AS1
HGNC (Hugo) TSPOAP1-AS1
HGNC Previous nameBZRAP1-AS1
HGNC Previous nameBZRAP1 antisense RNA 1 (non-protein coding)
LocusID (NCBI) 100506779
Atlas_Id 78521
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 58337202 and ends at 58353727 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)TSPOAP1-AS1   44148
Cards
Entrez_Gene (NCBI)TSPOAP1-AS1    TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1
AliasesBZRAP1-AS1
GeneCards (Weizmann)TSPOAP1-AS1
Ensembl hg19 (Hinxton)ENSG00000265148 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000265148 [Gene_View]  ENSG00000265148 [Sequence]  chr17:58337202-58353727 [Contig_View]  TSPOAP1-AS1 [Vega]
ICGC DataPortalENSG00000265148
TCGA cBioPortalTSPOAP1-AS1
AceView (NCBI)TSPOAP1-AS1
Genatlas (Paris)TSPOAP1-AS1
SOURCE (Princeton)TSPOAP1-AS1
Genetics Home Reference (NIH)TSPOAP1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)TSPOAP1-AS1  -     chr17:58337202-58353727 +  17q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPOAP1-AS1  -     17q22   [Description]    (hg19-Feb_2009)
GoldenPathTSPOAP1-AS1 - 17q22 [CytoView hg19]  TSPOAP1-AS1 - 17q22 [CytoView hg38]
ImmunoBaseENSG00000265148
Genome Data Viewer NCBITSPOAP1-AS1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI056234 AK000271 AK090885 AK311208 AK311306
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPOAP1-AS1
Gene ExpressionTSPOAP1-AS1 [ NCBI-GEO ]   TSPOAP1-AS1 [ EBI - ARRAY_EXPRESS ]   TSPOAP1-AS1 [ SEEK ]   TSPOAP1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPOAP1-AS1 [ Firebrowse - Broad ]
GenevisibleExpression of TSPOAP1-AS1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100506779
GTEX Portal (Tissue expression)TSPOAP1-AS1
Human Protein AtlasENSG00000265148-TSPOAP1-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TSPOAP1-AS1
Human Protein Atlas [tissue]ENSG00000265148-TSPOAP1-AS1 [tissue]
Protein Interaction databases
BioGRIDTSPOAP1-AS1
STRING (EMBL)TSPOAP1-AS1
ZODIACTSPOAP1-AS1
Ontologies - Pathways
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSPOAP1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:10 CEST 2021

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