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TSPOAP1 (TSPO associated protein 1)

Identity

Alias (NCBI)BZRAP1
PBR-IP
PRAX-1
PRAX1
RIM-BP1
RIMBP1
HGNC (Hugo) TSPOAP1
HGNC Alias symbPRAX-1
KIAA0612
RIM-BP1
RIMBP1
HGNC Previous nameBZRAP1
HGNC Previous namebenzodiazepine receptor (peripheral) associated protein 1
LocusID (NCBI) 9256
Atlas_Id 78578
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 58301231 and ends at 58328795 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSPOAP1   16831
Cards
Entrez_Gene (NCBI)TSPOAP1    TSPO associated protein 1
AliasesBZRAP1; PBR-IP; PRAX-1; PRAX1; 
RIM-BP1; RIMBP1
GeneCards (Weizmann)TSPOAP1
Ensembl hg19 (Hinxton)ENSG00000005379 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000005379 [Gene_View]  ENSG00000005379 [Sequence]  chr17:58301231-58328795 [Contig_View]  TSPOAP1 [Vega]
ICGC DataPortalENSG00000005379
TCGA cBioPortalTSPOAP1
AceView (NCBI)TSPOAP1
Genatlas (Paris)TSPOAP1
SOURCE (Princeton)TSPOAP1
Genetics Home Reference (NIH)TSPOAP1
Genomic and cartography
GoldenPath hg38 (UCSC)TSPOAP1  -     chr17:58301231-58328795 -  17q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPOAP1  -     17q22   [Description]    (hg19-Feb_2009)
GoldenPathTSPOAP1 - 17q22 [CytoView hg19]  TSPOAP1 - 17q22 [CytoView hg38]
ImmunoBaseENSG00000005379
Genome Data Viewer NCBITSPOAP1 [Mapview hg19]  
OMIM610764   
Gene and transcription
Genbank (Entrez)AB014512 AF039571 AI811889 BC031401 BC146852
RefSeq transcript (Entrez)NM_001261835 NM_004758 NM_024418
Consensus coding sequences : CCDS (NCBI)TSPOAP1
Gene ExpressionTSPOAP1 [ NCBI-GEO ]   TSPOAP1 [ EBI - ARRAY_EXPRESS ]   TSPOAP1 [ SEEK ]   TSPOAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPOAP1 [ Firebrowse - Broad ]
GenevisibleExpression of TSPOAP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9256
GTEX Portal (Tissue expression)TSPOAP1
Human Protein AtlasENSG00000005379-TSPOAP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95153   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95153  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95153
PhosPhoSitePlusO95153
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    SH3 (PS50002)   
Domains : Interpro (EBI)FN3_dom    FN3_sf    Ig-like_fold    RIM-BP_SH3_2    RIM-BP_SH3_3    RIMBP1/2/3    SH3-like_dom_sf    SH3_domain   
Domain families : Pfam (Sanger)SH3_2 (PF07653)    SH3_9 (PF14604)   
Domain families : Pfam (NCBI)pfam07653    pfam14604   
Domain families : Smart (EMBL)FN3 (SM00060)  SH3 (SM00326)  
Conserved Domain (NCBI)TSPOAP1
SuperfamilyO95153
AlphaFold pdb e-kbO95153   
Human Protein Atlas [tissue]ENSG00000005379-TSPOAP1 [tissue]
HPRD09832
Protein Interaction databases
DIP (DOE-UCLA)O95153
IntAct (EBI)O95153
BioGRIDTSPOAP1
STRING (EMBL)TSPOAP1
ZODIACTSPOAP1
Ontologies - Pathways
QuickGOO95153
Ontology : AmiGOprotein binding  cytoplasm  mitochondrion  mitochondrion  cytosol  C21-steroid hormone biosynthetic process  neurotransmitter transport  neuromuscular synaptic transmission  biological_process  benzodiazepine receptor binding  benzodiazepine receptor binding  calyx of Held  glutamatergic synapse  regulation of presynaptic cytosolic calcium ion concentration  voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium levels  
Ontology : EGO-EBIprotein binding  cytoplasm  mitochondrion  mitochondrion  cytosol  C21-steroid hormone biosynthetic process  neurotransmitter transport  neuromuscular synaptic transmission  biological_process  benzodiazepine receptor binding  benzodiazepine receptor binding  calyx of Held  glutamatergic synapse  regulation of presynaptic cytosolic calcium ion concentration  voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium levels  
NDEx NetworkTSPOAP1
Atlas of Cancer Signalling NetworkTSPOAP1
Wikipedia pathwaysTSPOAP1
Orthology - Evolution
OrthoDB9256
GeneTree (enSembl)ENSG00000005379
Phylogenetic Trees/Animal Genes : TreeFamTSPOAP1
Homologs : HomoloGeneTSPOAP1
Homology/Alignments : Family Browser (UCSC)TSPOAP1
Gene fusions - Rearrangements
Fusion : QuiverTSPOAP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPOAP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPOAP1
dbVarTSPOAP1
ClinVarTSPOAP1
MonarchTSPOAP1
1000_GenomesTSPOAP1 
Exome Variant ServerTSPOAP1
GNOMAD BrowserENSG00000005379
Varsome BrowserTSPOAP1
ACMGTSPOAP1 variants
VarityO95153
Genomic Variants (DGV)TSPOAP1 [DGVbeta]
DECIPHERTSPOAP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPOAP1 
Mutations
ICGC Data PortalTSPOAP1 
TCGA Data PortalTSPOAP1 
Broad Tumor PortalTSPOAP1
OASIS PortalTSPOAP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPOAP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSPOAP1
Mutations and Diseases : HGMDTSPOAP1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSPOAP1
DgiDB (Drug Gene Interaction Database)TSPOAP1
DoCM (Curated mutations)TSPOAP1
CIViC (Clinical Interpretations of Variants in Cancer)TSPOAP1
Cancer3DTSPOAP1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610764   
Orphanet
DisGeNETTSPOAP1
MedgenTSPOAP1
Genetic Testing Registry TSPOAP1
NextProtO95153 [Medical]
GENETestsTSPOAP1
Target ValidationTSPOAP1
Huge Navigator TSPOAP1 [HugePedia]
ClinGenTSPOAP1
Clinical trials, drugs, therapy
MyCancerGenomeTSPOAP1
Protein Interactions : CTDTSPOAP1
Pharm GKB GenePA128394545
PharosO95153
Clinical trialTSPOAP1
Miscellaneous
canSAR (ICR)TSPOAP1
HarmonizomeTSPOAP1
DataMed IndexTSPOAP1
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSPOAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:10 CEST 2021

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