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TSPY1 (testis specific protein, Y-linked 1)

Identity

Other namesCT78
DYS14
TSPY
pJA923
HGNC (Hugo) TSPY1
LocusID (NCBI) 7258
Location Yp11.2
Location_base_pair Starts at 9304564 and ends at 9307358 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TSPY1   12381
Entrez_Gene (NCBI)TSPY1  7258  testis specific protein, Y-linked 1
Cards
GeneCards (Weizmann)TSPY1
Ensembl (Hinxton)ENSG00000258992 [Gene_View]  chrY:9304564-9307358 [Contig_View]  TSPY1 [Vega]
AceView (NCBI)TSPY1
Genatlas (Paris)TSPY1
SOURCE (Stanford)NM_001197242 NM_003308
Genomic and cartography
GoldenPath (UCSC)TSPY1  -  Yp11.2   chrY:9304564-9307358 +  Yp11.2   [Description]    (hg19-Feb_2009)
EnsemblTSPY1 - Yp11.2 [CytoView]
Mapping of homologs : NCBITSPY1 [Mapview]
OMIM480100   
Gene and transcription
Genbank (Entrez)AI002165 AY130858 BC121113 M94893 M98525
RefSeq transcript (SRS)NM_001197242 NM_003308
RefSeq transcript (Entrez)NM_001197242 NM_003308
RefSeq genomic (SRS)NC_000024 NG_027958 NT_011878
RefSeq genomic (Entrez)NC_000024 NG_027958 NT_011878
Consensus coding sequences : CCDS (NCBI)TSPY1
Cluster EST : UnigeneHs.647493 [ SRS ] Hs.647493 [ NCBI ]
CGAP (NCI)Hs.647493
Alternative Splicing : Fast-db (Paris)GSHG0032474
Alternative Splicing GalleryENSG00000258992
Gene ExpressionTSPY1 [ NCBI-GEO ]   TSPY1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ01534 (SRS) Q01534 (Uniprot)
NextProtQ01534
With graphics : InterProQ01534
Splice isoforms : SwissVarQ01534(Swissvar)
Domains : Interpro (SRS)NAP_family   
Domains : Interpro (EBI)NAP_family   
Related proteins : CluSTrQ01534
Domain families : Pfam (SRS)NAP (PF00956)   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
DMDM7258
Blocks (Seattle)Q01534
Human Protein AtlasENSG00000258992
HPRD11852
IPIIPI00877005   IPI01013581   
Protein Interaction databases
DIP (DOE-UCLA)Q01534
IntAct (EBI)Q01534
FunCoupENSG00000258992
REACTOMETSPY1
Protein Interaction Database7258
BioGRIDTSPY1
InParanoidQ01534
Interologous Interaction database Q01534
IntegromeDBTSPY1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TSPY1
SNP (GeneSNP Utah)TSPY1
SNP : HGBaseTSPY1
Genetic variants : HAPMAPTSPY1
Somatic Mutations in Cancer : COSMICTSPY1 
CONAN: Copy Number AnalysisTSPY1 
Mutations and Diseases : HGMDTSPY1
OMIM480100   
GENETests480100   
Disease Genetic AssociationTSPY1
Huge Navigator TSPY1 [HugePedia]  TSPY1 [HugeCancerGEM]
Genomic VariantsTSPY1  TSPY1 [DGVbeta]
ClinVarTSPY1
snp3D : Map Gene to Disease7258
General knowledge
Homologs : HomoloGeneTSPY1
Homology/Alignments : Family Browser (UCSC)TSPY1
Phylogenetic Trees/Animal Genes : TreeFamTSPY1
Chemical/Protein Interactions : CTD7258
Chemical/Pharm GKB GenePA37049
Clinical trialTSPY1
Cancer Resource (Charite)ENSG00000258992
Ontology : AmiGOmolecular_function  protein binding  cellular_component  nucleus  cytoplasm  nucleosome assembly  spermatogenesis  gonadal mesoderm development  sex differentiation  cell proliferation  cell differentiation  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  nucleus  cytoplasm  nucleosome assembly  spermatogenesis  gonadal mesoderm development  sex differentiation  cell proliferation  cell differentiation  
Other databases
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
PubGeneTSPY1
iHOPTSPY1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:57:30 CEST 2013
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