Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TSPY10 (testis specific protein, Y-linked 10)

Identity

Other alias-
HGNC (Hugo) TSPY10
LocusID (NCBI) 100289087
Atlas_Id 75246
Location Yp11.2  [Link to chromosome band Yp11]
Location_base_pair Starts at 9337464 and ends at 9340278 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPY10   37473
Cards
Entrez_Gene (NCBI)TSPY10  100289087  testis specific protein, Y-linked 10
Aliases
GeneCards (Weizmann)TSPY10
Ensembl hg19 (Hinxton)ENSG00000236424 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236424 [Gene_View]  chrY:9337464-9340278 [Contig_View]  TSPY10 [Vega]
ICGC DataPortalENSG00000236424
TCGA cBioPortalTSPY10
AceView (NCBI)TSPY10
Genatlas (Paris)TSPY10
WikiGenes100289087
SOURCE (Princeton)TSPY10
Genetics Home Reference (NIH)TSPY10
Genomic and cartography
GoldenPath hg38 (UCSC)TSPY10  -     chrY:9337464-9340278 +  Yp11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPY10  -     Yp11.2   [Description]    (hg19-Feb_2009)
EnsemblTSPY10 - Yp11.2 [CytoView hg19]  TSPY10 - Yp11.2 [CytoView hg38]
Mapping of homologs : NCBITSPY10 [Mapview hg19]  TSPY10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK308271 AY130858 BC075016 BC121114 DB545400
RefSeq transcript (Entrez)NM_001282469 NM_001320962
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPY10
Cluster EST : UnigeneHs.730364 [ NCBI ]
CGAP (NCI)Hs.730364
Alternative Splicing GalleryENSG00000236424
Gene ExpressionTSPY10 [ NCBI-GEO ]   TSPY10 [ EBI - ARRAY_EXPRESS ]   TSPY10 [ SEEK ]   TSPY10 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPY10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100289087
GTEX Portal (Tissue expression)TSPY10
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CW01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CW01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CW01
Splice isoforms : SwissVarP0CW01
PhosPhoSitePlusP0CW01
Domains : Interpro (EBI)NAP_family   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
Conserved Domain (NCBI)TSPY10
DMDM Disease mutations100289087
Blocks (Seattle)TSPY10
SuperfamilyP0CW01
Human Protein AtlasENSG00000236424
Peptide AtlasP0CW01
IPIIPI00645512   
Protein Interaction databases
DIP (DOE-UCLA)P0CW01
IntAct (EBI)P0CW01
FunCoupENSG00000236424
BioGRIDTSPY10
STRING (EMBL)TSPY10
ZODIACTSPY10
Ontologies - Pathways
QuickGOP0CW01
Ontology : AmiGOnucleus  cytoplasm  nucleosome assembly  spermatogenesis  gonadal mesoderm development  cell differentiation  
Ontology : EGO-EBInucleus  cytoplasm  nucleosome assembly  spermatogenesis  gonadal mesoderm development  cell differentiation  
NDEx NetworkTSPY10
Atlas of Cancer Signalling NetworkTSPY10
Wikipedia pathwaysTSPY10
Orthology - Evolution
OrthoDB100289087
GeneTree (enSembl)ENSG00000236424
Phylogenetic Trees/Animal Genes : TreeFamTSPY10
HOVERGENP0CW01
HOGENOMP0CW01
Homologs : HomoloGeneTSPY10
Homology/Alignments : Family Browser (UCSC)TSPY10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPY10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPY10
dbVarTSPY10
ClinVarTSPY10
1000_GenomesTSPY10 
Exome Variant ServerTSPY10
ExAC (Exome Aggregation Consortium)TSPY10 (select the gene name)
Genetic variants : HAPMAP100289087
Genomic Variants (DGV)TSPY10 [DGVbeta]
DECIPHERTSPY10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPY10 
Mutations
ICGC Data PortalTSPY10 
TCGA Data PortalTSPY10 
Broad Tumor PortalTSPY10
OASIS PortalTSPY10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPY10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPY10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPY10
DgiDB (Drug Gene Interaction Database)TSPY10
DoCM (Curated mutations)TSPY10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPY10 (select a term)
intoGenTSPY10
Cancer3DTSPY10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTSPY10
Genetic Testing Registry TSPY10
NextProtP0CW01 [Medical]
TSGene100289087
GENETestsTSPY10
Target ValidationTSPY10
Huge Navigator TSPY10 [HugePedia]
snp3D : Map Gene to Disease100289087
BioCentury BCIQTSPY10
ClinGenTSPY10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100289087
Chemical/Pharm GKB GenePA165791579
Clinical trialTSPY10
Miscellaneous
canSAR (ICR)TSPY10 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPY10
EVEXTSPY10
GoPubMedTSPY10
iHOPTSPY10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:42:44 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.