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TSPY10 (testis specific protein Y-linked 10)

Identity

Alias (NCBI)CT78
TSPY
TSPY1
TSPY3
HGNC (Hugo) TSPY10
LocusID (NCBI) 100289087
Atlas_Id 75246
Location Yp11.2  [Link to chromosome band Yp11]
Location_base_pair Starts at 9337464 and ends at 9340278 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSPY10   37473
Cards
Entrez_Gene (NCBI)TSPY10    testis specific protein Y-linked 10
AliasesCT78; TSPY; TSPY1; TSPY3
GeneCards (Weizmann)TSPY10
Ensembl hg19 (Hinxton)ENSG00000236424 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236424 [Gene_View]  ENSG00000236424 [Sequence]  chrY:9337464-9340278 [Contig_View]  TSPY10 [Vega]
ICGC DataPortalENSG00000236424
TCGA cBioPortalTSPY10
AceView (NCBI)TSPY10
Genatlas (Paris)TSPY10
SOURCE (Princeton)TSPY10
Genetics Home Reference (NIH)TSPY10
Genomic and cartography
GoldenPath hg38 (UCSC)TSPY10  -     chrY:9337464-9340278 +  Yp11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPY10  -     Yp11.2   [Description]    (hg19-Feb_2009)
GoldenPathTSPY10 - Yp11.2 [CytoView hg19]  TSPY10 - Yp11.2 [CytoView hg38]
ImmunoBaseENSG00000236424
Genome Data Viewer NCBITSPY10 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK308271 AY130858 BC075016 BC121114 DB545400
RefSeq transcript (Entrez)NM_001282469 NM_001320962
Consensus coding sequences : CCDS (NCBI)TSPY10
Gene ExpressionTSPY10 [ NCBI-GEO ]   TSPY10 [ EBI - ARRAY_EXPRESS ]   TSPY10 [ SEEK ]   TSPY10 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPY10 [ Firebrowse - Broad ]
GenevisibleExpression of TSPY10 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100289087
GTEX Portal (Tissue expression)TSPY10
Human Protein AtlasENSG00000236424-TSPY10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CW01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CW01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CW01
PhosPhoSitePlusP0CW01
Domains : Interpro (EBI)NAP-like_sf    NAP_family   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
Conserved Domain (NCBI)TSPY10
SuperfamilyP0CW01
AlphaFold pdb e-kbP0CW01   
Human Protein Atlas [tissue]ENSG00000236424-TSPY10 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)P0CW01
IntAct (EBI)P0CW01
BioGRIDTSPY10
STRING (EMBL)TSPY10
ZODIACTSPY10
Ontologies - Pathways
QuickGOP0CW01
Ontology : AmiGOchromatin  chromatin binding  protein binding  nucleus  nucleosome assembly  spermatogenesis  gonadal mesoderm development  cell differentiation  histone binding  
Ontology : EGO-EBIchromatin  chromatin binding  protein binding  nucleus  nucleosome assembly  spermatogenesis  gonadal mesoderm development  cell differentiation  histone binding  
NDEx NetworkTSPY10
Atlas of Cancer Signalling NetworkTSPY10
Wikipedia pathwaysTSPY10
Orthology - Evolution
OrthoDB100289087
GeneTree (enSembl)ENSG00000236424
Phylogenetic Trees/Animal Genes : TreeFamTSPY10
Homologs : HomoloGeneTSPY10
Homology/Alignments : Family Browser (UCSC)TSPY10
Gene fusions - Rearrangements
Fusion : QuiverTSPY10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPY10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPY10
dbVarTSPY10
ClinVarTSPY10
MonarchTSPY10
1000_GenomesTSPY10 
Exome Variant ServerTSPY10
GNOMAD BrowserENSG00000236424
Varsome BrowserTSPY10
ACMGTSPY10 variants
VarityP0CW01
Genomic Variants (DGV)TSPY10 [DGVbeta]
DECIPHERTSPY10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPY10 
Mutations
ICGC Data PortalTSPY10 
TCGA Data PortalTSPY10 
Broad Tumor PortalTSPY10
OASIS PortalTSPY10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPY10  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSPY10
Mutations and Diseases : HGMDTSPY10
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSPY10
DgiDB (Drug Gene Interaction Database)TSPY10
DoCM (Curated mutations)TSPY10
CIViC (Clinical Interpretations of Variants in Cancer)TSPY10
Cancer3DTSPY10
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTSPY10
MedgenTSPY10
Genetic Testing Registry TSPY10
NextProtP0CW01 [Medical]
GENETestsTSPY10
Target ValidationTSPY10
Huge Navigator TSPY10 [HugePedia]
ClinGenTSPY10
Clinical trials, drugs, therapy
MyCancerGenomeTSPY10
Protein Interactions : CTDTSPY10
Pharm GKB GenePA165791579
PharosP0CW01
Clinical trialTSPY10
Miscellaneous
canSAR (ICR)TSPY10
HarmonizomeTSPY10
DataMed IndexTSPY10
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSPY10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:27:11 CEST 2021

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