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TSPY2 (testis specific protein, Y-linked 2)

Identity

Alias_symbol (synonym)TSPYQ1
Other alias
HGNC (Hugo) TSPY2
LocusID (NCBI) 64591
Atlas_Id 75247
Location Yp11.2  [Link to chromosome band Yp11]
Location_base_pair Starts at 6246223 and ends at 6249012 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPY2   23924
Cards
Entrez_Gene (NCBI)TSPY2  64591  testis specific protein, Y-linked 2
AliasesTSPYQ1
GeneCards (Weizmann)TSPY2
Ensembl hg19 (Hinxton)ENSG00000168757 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168757 [Gene_View]  chrY:6246223-6249012 [Contig_View]  TSPY2 [Vega]
ICGC DataPortalENSG00000168757
TCGA cBioPortalTSPY2
AceView (NCBI)TSPY2
Genatlas (Paris)TSPY2
WikiGenes64591
SOURCE (Princeton)TSPY2
Genetics Home Reference (NIH)TSPY2
Genomic and cartography
GoldenPath hg38 (UCSC)TSPY2  -     chrY:6246223-6249012 +  Yp11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPY2  -     Yp11.2   [Description]    (hg19-Feb_2009)
EnsemblTSPY2 - Yp11.2 [CytoView hg19]  TSPY2 - Yp11.2 [CytoView hg38]
Mapping of homologs : NCBITSPY2 [Mapview hg19]  TSPY2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK307425 BC148425
RefSeq transcript (Entrez)NM_022573
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPY2
Cluster EST : UnigeneHs.646249 [ NCBI ]
CGAP (NCI)Hs.646249
Alternative Splicing GalleryENSG00000168757
Gene ExpressionTSPY2 [ NCBI-GEO ]   TSPY2 [ EBI - ARRAY_EXPRESS ]   TSPY2 [ SEEK ]   TSPY2 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPY2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64591
GTEX Portal (Tissue expression)TSPY2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NKD2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NKD2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NKD2
Splice isoforms : SwissVarA6NKD2
PhosPhoSitePlusA6NKD2
Domains : Interpro (EBI)NAP_family   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
Conserved Domain (NCBI)TSPY2
DMDM Disease mutations64591
Blocks (Seattle)TSPY2
SuperfamilyA6NKD2
Human Protein AtlasENSG00000168757
Peptide AtlasA6NKD2
HPRD18234
IPIIPI00642439   
Protein Interaction databases
DIP (DOE-UCLA)A6NKD2
IntAct (EBI)A6NKD2
FunCoupENSG00000168757
BioGRIDTSPY2
STRING (EMBL)TSPY2
ZODIACTSPY2
Ontologies - Pathways
QuickGOA6NKD2
Ontology : AmiGOnucleus  cytoplasm  nucleosome assembly  spermatogenesis  gonadal mesoderm development  cell differentiation  
Ontology : EGO-EBInucleus  cytoplasm  nucleosome assembly  spermatogenesis  gonadal mesoderm development  cell differentiation  
NDEx NetworkTSPY2
Atlas of Cancer Signalling NetworkTSPY2
Wikipedia pathwaysTSPY2
Orthology - Evolution
OrthoDB64591
GeneTree (enSembl)ENSG00000168757
Phylogenetic Trees/Animal Genes : TreeFamTSPY2
HOVERGENA6NKD2
HOGENOMA6NKD2
Homologs : HomoloGeneTSPY2
Homology/Alignments : Family Browser (UCSC)TSPY2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPY2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPY2
dbVarTSPY2
ClinVarTSPY2
1000_GenomesTSPY2 
Exome Variant ServerTSPY2
ExAC (Exome Aggregation Consortium)TSPY2 (select the gene name)
Genetic variants : HAPMAP64591
Genomic Variants (DGV)TSPY2 [DGVbeta]
DECIPHERTSPY2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPY2 
Mutations
ICGC Data PortalTSPY2 
TCGA Data PortalTSPY2 
Broad Tumor PortalTSPY2
OASIS PortalTSPY2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPY2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPY2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPY2
DgiDB (Drug Gene Interaction Database)TSPY2
DoCM (Curated mutations)TSPY2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPY2 (select a term)
intoGenTSPY2
Cancer3DTSPY2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTSPY2
Genetic Testing Registry TSPY2
NextProtA6NKD2 [Medical]
TSGene64591
GENETestsTSPY2
Target ValidationTSPY2
Huge Navigator TSPY2 [HugePedia]
snp3D : Map Gene to Disease64591
BioCentury BCIQTSPY2
ClinGenTSPY2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64591
Chemical/Pharm GKB GenePA134958857
Clinical trialTSPY2
Miscellaneous
canSAR (ICR)TSPY2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPY2
EVEXTSPY2
GoPubMedTSPY2
iHOPTSPY2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:44 CEST 2017

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