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TSPY26P (testis specific protein Y-linked 26, pseudogene)

Identity

Alias (NCBI)TSPYL3
bA392M18.1
HGNC (Hugo) TSPY26P
HGNC Alias symbbA392M18.1
HGNC Previous nameTSPYL3
HGNC Previous nameTSPY-like 3
 TSPY-like 3 (pseudogene)
LocusID (NCBI) 128854
Atlas_Id 75248
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 32189146 and ends at 32190360 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSPY26P   16256
Cards
Entrez_Gene (NCBI)TSPY26P    testis specific protein Y-linked 26, pseudogene
AliasesTSPYL3; bA392M18.1
GeneCards (Weizmann)TSPY26P
Ensembl hg19 (Hinxton)ENSG00000235217 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235217 [Gene_View]  ENSG00000235217 [Sequence]  chr20:32189146-32190360 [Contig_View]  TSPY26P [Vega]
ICGC DataPortalENSG00000235217
TCGA cBioPortalTSPY26P
AceView (NCBI)TSPY26P
Genatlas (Paris)TSPY26P
SOURCE (Princeton)TSPY26P
Genetics Home Reference (NIH)TSPY26P
Genomic and cartography
GoldenPath hg38 (UCSC)TSPY26P  -     chr20:32189146-32190360 -  20q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPY26P  -     20q11.21   [Description]    (hg19-Feb_2009)
GoldenPathTSPY26P - 20q11.21 [CytoView hg19]  TSPY26P - 20q11.21 [CytoView hg38]
ImmunoBaseENSG00000235217
Genome Data Viewer NCBITSPY26P [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC101556 BC101558
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPY26P
Gene ExpressionTSPY26P [ NCBI-GEO ]   TSPY26P [ EBI - ARRAY_EXPRESS ]   TSPY26P [ SEEK ]   TSPY26P [ MEM ]
Gene Expression Viewer (FireBrowse)TSPY26P [ Firebrowse - Broad ]
GenevisibleExpression of TSPY26P in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128854
GTEX Portal (Tissue expression)TSPY26P
Human Protein AtlasENSG00000235217-TSPY26P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H489   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H489  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H489
PhosPhoSitePlusQ9H489
Domains : Interpro (EBI)NAP-like_sf    NAP_family   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
Conserved Domain (NCBI)TSPY26P
SuperfamilyQ9H489
AlphaFold pdb e-kbQ9H489   
Human Protein Atlas [tissue]ENSG00000235217-TSPY26P [tissue]
HPRD18235
Protein Interaction databases
DIP (DOE-UCLA)Q9H489
IntAct (EBI)Q9H489
BioGRIDTSPY26P
STRING (EMBL)TSPY26P
ZODIACTSPY26P
Ontologies - Pathways
QuickGOQ9H489
Ontology : AmiGOchromatin  chromatin binding  nucleus  nucleosome assembly  histone binding  
Ontology : EGO-EBIchromatin  chromatin binding  nucleus  nucleosome assembly  histone binding  
NDEx NetworkTSPY26P
Atlas of Cancer Signalling NetworkTSPY26P
Wikipedia pathwaysTSPY26P
Orthology - Evolution
OrthoDB128854
GeneTree (enSembl)ENSG00000235217
Phylogenetic Trees/Animal Genes : TreeFamTSPY26P
Homologs : HomoloGeneTSPY26P
Homology/Alignments : Family Browser (UCSC)TSPY26P
Gene fusions - Rearrangements
Fusion : QuiverTSPY26P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPY26P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPY26P
dbVarTSPY26P
ClinVarTSPY26P
MonarchTSPY26P
1000_GenomesTSPY26P 
Exome Variant ServerTSPY26P
GNOMAD BrowserENSG00000235217
Varsome BrowserTSPY26P
ACMGTSPY26P variants
VarityQ9H489
Genomic Variants (DGV)TSPY26P [DGVbeta]
DECIPHERTSPY26P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPY26P 
Mutations
ICGC Data PortalTSPY26P 
TCGA Data PortalTSPY26P 
Broad Tumor PortalTSPY26P
OASIS PortalTSPY26P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTSPY26P
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSPY26P
DgiDB (Drug Gene Interaction Database)TSPY26P
DoCM (Curated mutations)TSPY26P
CIViC (Clinical Interpretations of Variants in Cancer)TSPY26P
Cancer3DTSPY26P
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTSPY26P
MedgenTSPY26P
Genetic Testing Registry TSPY26P
NextProtQ9H489 [Medical]
GENETestsTSPY26P
Target ValidationTSPY26P
Huge Navigator TSPY26P [HugePedia]
ClinGenTSPY26P
Clinical trials, drugs, therapy
MyCancerGenomeTSPY26P
Protein Interactions : CTDTSPY26P
Pharm GKB GenePA38099
PharosQ9H489
Clinical trialTSPY26P
Miscellaneous
canSAR (ICR)TSPY26P
HarmonizomeTSPY26P
DataMed IndexTSPY26P
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSPY26P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:11 CEST 2021

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