Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TSPY26P (testis specific protein, Y-linked 26, pseudogene)

Identity

Alias_namesTSPYL3
TSPY-like 3
TSPY-like 3 (pseudogene)
Alias_symbol (synonym)bA392M18.1
Other alias
HGNC (Hugo) TSPY26P
LocusID (NCBI) 128854
Atlas_Id 75248
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 32189146 and ends at 32190360 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPY26P   16256
Cards
Entrez_Gene (NCBI)TSPY26P  128854  testis specific protein, Y-linked 26, pseudogene
AliasesTSPYL3; bA392M18.1
GeneCards (Weizmann)TSPY26P
Ensembl hg19 (Hinxton)ENSG00000235217 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235217 [Gene_View]  chr20:32189146-32190360 [Contig_View]  TSPY26P [Vega]
ICGC DataPortalENSG00000235217
TCGA cBioPortalTSPY26P
AceView (NCBI)TSPY26P
Genatlas (Paris)TSPY26P
WikiGenes128854
SOURCE (Princeton)TSPY26P
Genetics Home Reference (NIH)TSPY26P
Genomic and cartography
GoldenPath hg38 (UCSC)TSPY26P  -     chr20:32189146-32190360 -  20q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPY26P  -     20q11.21   [Description]    (hg19-Feb_2009)
EnsemblTSPY26P - 20q11.21 [CytoView hg19]  TSPY26P - 20q11.21 [CytoView hg38]
Mapping of homologs : NCBITSPY26P [Mapview hg19]  TSPY26P [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC101556 BC101558
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPY26P
Cluster EST : UnigeneHs.647447 [ NCBI ]
CGAP (NCI)Hs.647447
Alternative Splicing GalleryENSG00000235217
Gene ExpressionTSPY26P [ NCBI-GEO ]   TSPY26P [ EBI - ARRAY_EXPRESS ]   TSPY26P [ SEEK ]   TSPY26P [ MEM ]
Gene Expression Viewer (FireBrowse)TSPY26P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128854
GTEX Portal (Tissue expression)TSPY26P
Human Protein AtlasENSG00000235217-TSPY26P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H489   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H489  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H489
Splice isoforms : SwissVarQ9H489
PhosPhoSitePlusQ9H489
Domains : Interpro (EBI)NAP_family   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
Conserved Domain (NCBI)TSPY26P
DMDM Disease mutations128854
Blocks (Seattle)TSPY26P
SuperfamilyQ9H489
Human Protein Atlas [tissue]ENSG00000235217-TSPY26P [tissue]
Peptide AtlasQ9H489
HPRD18235
IPIIPI00016012   
Protein Interaction databases
DIP (DOE-UCLA)Q9H489
IntAct (EBI)Q9H489
FunCoupENSG00000235217
BioGRIDTSPY26P
STRING (EMBL)TSPY26P
ZODIACTSPY26P
Ontologies - Pathways
QuickGOQ9H489
Ontology : AmiGOnucleus  nucleosome assembly  
Ontology : EGO-EBInucleus  nucleosome assembly  
NDEx NetworkTSPY26P
Atlas of Cancer Signalling NetworkTSPY26P
Wikipedia pathwaysTSPY26P
Orthology - Evolution
OrthoDB128854
GeneTree (enSembl)ENSG00000235217
Phylogenetic Trees/Animal Genes : TreeFamTSPY26P
HOVERGENQ9H489
HOGENOMQ9H489
Homologs : HomoloGeneTSPY26P
Homology/Alignments : Family Browser (UCSC)TSPY26P
Gene fusions - Rearrangements
Tumor Fusion PortalTSPY26P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPY26P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPY26P
dbVarTSPY26P
ClinVarTSPY26P
1000_GenomesTSPY26P 
Exome Variant ServerTSPY26P
ExAC (Exome Aggregation Consortium)ENSG00000235217
GNOMAD BrowserENSG00000235217
Genetic variants : HAPMAP128854
Genomic Variants (DGV)TSPY26P [DGVbeta]
DECIPHERTSPY26P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPY26P 
Mutations
ICGC Data PortalTSPY26P 
TCGA Data PortalTSPY26P 
Broad Tumor PortalTSPY26P
OASIS PortalTSPY26P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTSPY26P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPY26P
DgiDB (Drug Gene Interaction Database)TSPY26P
DoCM (Curated mutations)TSPY26P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPY26P (select a term)
intoGenTSPY26P
Cancer3DTSPY26P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTSPY26P
MedgenTSPY26P
Genetic Testing Registry TSPY26P
NextProtQ9H489 [Medical]
TSGene128854
GENETestsTSPY26P
Target ValidationTSPY26P
Huge Navigator TSPY26P [HugePedia]
snp3D : Map Gene to Disease128854
BioCentury BCIQTSPY26P
ClinGenTSPY26P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128854
Chemical/Pharm GKB GenePA38099
Clinical trialTSPY26P
Miscellaneous
canSAR (ICR)TSPY26P (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPY26P
EVEXTSPY26P
GoPubMedTSPY26P
iHOPTSPY26P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:42:25 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.