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TSPY3 (testis specific protein, Y-linked 3)

Identity

Alias_symbol (synonym)CT78
Other alias
HGNC (Hugo) TSPY3
LocusID (NCBI) 728137
Atlas_Id 75249
Location Yp11.2  [Link to chromosome band Yp11]
Location_base_pair Starts at 9337464 and ends at 9340278 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPY3   33876
Cards
Entrez_Gene (NCBI)TSPY3  728137  testis specific protein, Y-linked 3
AliasesCT78
GeneCards (Weizmann)TSPY3
Ensembl hg19 (Hinxton)ENSG00000228927 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228927 [Gene_View]  chrY:9337464-9340278 [Contig_View]  TSPY3 [Vega]
ICGC DataPortalENSG00000228927
TCGA cBioPortalTSPY3
AceView (NCBI)TSPY3
Genatlas (Paris)TSPY3
WikiGenes728137
SOURCE (Princeton)TSPY3
Genetics Home Reference (NIH)TSPY3
Genomic and cartography
GoldenPath hg38 (UCSC)TSPY3  -     chrY:9337464-9340278 +  Yp11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPY3  -     Yp11.2   [Description]    (hg19-Feb_2009)
EnsemblTSPY3 - Yp11.2 [CytoView hg19]  TSPY3 - Yp11.2 [CytoView hg38]
Mapping of homologs : NCBITSPY3 [Mapview hg19]  TSPY3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001077697
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPY3
Cluster EST : UnigeneHs.556121 [ NCBI ]
CGAP (NCI)Hs.556121
Alternative Splicing GalleryENSG00000228927
Gene ExpressionTSPY3 [ NCBI-GEO ]   TSPY3 [ EBI - ARRAY_EXPRESS ]   TSPY3 [ SEEK ]   TSPY3 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPY3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728137
GTEX Portal (Tissue expression)TSPY3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CV98   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CV98  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CV98
Splice isoforms : SwissVarP0CV98
PhosPhoSitePlusP0CV98
Domains : Interpro (EBI)NAP_family   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
Conserved Domain (NCBI)TSPY3
DMDM Disease mutations728137
Blocks (Seattle)TSPY3
SuperfamilyP0CV98
Human Protein AtlasENSG00000228927
Peptide AtlasP0CV98
IPIIPI01009857   IPI00943100   IPI01012215   IPI00936494   IPI00643010   
Protein Interaction databases
DIP (DOE-UCLA)P0CV98
IntAct (EBI)P0CV98
FunCoupENSG00000228927
BioGRIDTSPY3
STRING (EMBL)TSPY3
ZODIACTSPY3
Ontologies - Pathways
QuickGOP0CV98
Ontology : AmiGOnucleus  cytoplasm  nucleosome assembly  spermatogenesis  gonadal mesoderm development  cell differentiation  
Ontology : EGO-EBInucleus  cytoplasm  nucleosome assembly  spermatogenesis  gonadal mesoderm development  cell differentiation  
NDEx NetworkTSPY3
Atlas of Cancer Signalling NetworkTSPY3
Wikipedia pathwaysTSPY3
Orthology - Evolution
OrthoDB728137
GeneTree (enSembl)ENSG00000228927
Phylogenetic Trees/Animal Genes : TreeFamTSPY3
HOVERGENP0CV98
HOGENOMP0CV98
Homologs : HomoloGeneTSPY3
Homology/Alignments : Family Browser (UCSC)TSPY3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPY3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPY3
dbVarTSPY3
ClinVarTSPY3
1000_GenomesTSPY3 
Exome Variant ServerTSPY3
ExAC (Exome Aggregation Consortium)TSPY3 (select the gene name)
Genetic variants : HAPMAP728137
Genomic Variants (DGV)TSPY3 [DGVbeta]
DECIPHERTSPY3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPY3 
Mutations
ICGC Data PortalTSPY3 
TCGA Data PortalTSPY3 
Broad Tumor PortalTSPY3
OASIS PortalTSPY3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPY3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPY3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPY3
DgiDB (Drug Gene Interaction Database)TSPY3
DoCM (Curated mutations)TSPY3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPY3 (select a term)
intoGenTSPY3
Cancer3DTSPY3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTSPY3
Genetic Testing Registry TSPY3
NextProtP0CV98 [Medical]
TSGene728137
GENETestsTSPY3
Target ValidationTSPY3
Huge Navigator TSPY3 [HugePedia]
snp3D : Map Gene to Disease728137
BioCentury BCIQTSPY3
ClinGenTSPY3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728137
Chemical/Pharm GKB GenePA164727366
Clinical trialTSPY3
Miscellaneous
canSAR (ICR)TSPY3 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPY3
EVEXTSPY3
GoPubMedTSPY3
iHOPTSPY3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:47:24 CEST 2017

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