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TSPY3 (testis specific protein Y-linked 3)

Identity

Alias (NCBI)CT78
TSPY
TSPY1
TSPY10
HGNC (Hugo) TSPY3
HGNC Alias symbCT78
LocusID (NCBI) 728137
Atlas_Id 75249
Location Yp11.2  [Link to chromosome band Yp11]
Location_base_pair Starts at 9337464 and ends at 9340278 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSPY3   33876
Cards
Entrez_Gene (NCBI)TSPY3    testis specific protein Y-linked 3
AliasesCT78; TSPY; TSPY1; TSPY10
GeneCards (Weizmann)TSPY3
Ensembl hg19 (Hinxton)ENSG00000228927 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228927 [Gene_View]  ENSG00000228927 [Sequence]  chrY:9337464-9340278 [Contig_View]  TSPY3 [Vega]
ICGC DataPortalENSG00000228927
TCGA cBioPortalTSPY3
AceView (NCBI)TSPY3
Genatlas (Paris)TSPY3
SOURCE (Princeton)TSPY3
Genetics Home Reference (NIH)TSPY3
Genomic and cartography
GoldenPath hg38 (UCSC)TSPY3  -     chrY:9337464-9340278 +  Yp11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPY3  -     Yp11.2   [Description]    (hg19-Feb_2009)
GoldenPathTSPY3 - Yp11.2 [CytoView hg19]  TSPY3 - Yp11.2 [CytoView hg38]
ImmunoBaseENSG00000228927
Genome Data Viewer NCBITSPY3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001077697
Consensus coding sequences : CCDS (NCBI)TSPY3
Gene ExpressionTSPY3 [ NCBI-GEO ]   TSPY3 [ EBI - ARRAY_EXPRESS ]   TSPY3 [ SEEK ]   TSPY3 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPY3 [ Firebrowse - Broad ]
GenevisibleExpression of TSPY3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728137
GTEX Portal (Tissue expression)TSPY3
Human Protein AtlasENSG00000228927-TSPY3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CV98   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CV98  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CV98
PhosPhoSitePlusP0CV98
Domains : Interpro (EBI)NAP-like_sf    NAP_family   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
Conserved Domain (NCBI)TSPY3
SuperfamilyP0CV98
AlphaFold pdb e-kbP0CV98   
Human Protein Atlas [tissue]ENSG00000228927-TSPY3 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)P0CV98
IntAct (EBI)P0CV98
BioGRIDTSPY3
STRING (EMBL)TSPY3
ZODIACTSPY3
Ontologies - Pathways
QuickGOP0CV98
Ontology : AmiGOchromatin  chromatin binding  nucleus  nucleosome assembly  spermatogenesis  gonadal mesoderm development  cell differentiation  histone binding  
Ontology : EGO-EBIchromatin  chromatin binding  nucleus  nucleosome assembly  spermatogenesis  gonadal mesoderm development  cell differentiation  histone binding  
NDEx NetworkTSPY3
Atlas of Cancer Signalling NetworkTSPY3
Wikipedia pathwaysTSPY3
Orthology - Evolution
OrthoDB728137
GeneTree (enSembl)ENSG00000228927
Phylogenetic Trees/Animal Genes : TreeFamTSPY3
Homologs : HomoloGeneTSPY3
Homology/Alignments : Family Browser (UCSC)TSPY3
Gene fusions - Rearrangements
Fusion : QuiverTSPY3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPY3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPY3
dbVarTSPY3
ClinVarTSPY3
MonarchTSPY3
1000_GenomesTSPY3 
Exome Variant ServerTSPY3
GNOMAD BrowserENSG00000228927
Varsome BrowserTSPY3
ACMGTSPY3 variants
VarityP0CV98
Genomic Variants (DGV)TSPY3 [DGVbeta]
DECIPHERTSPY3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPY3 
Mutations
ICGC Data PortalTSPY3 
TCGA Data PortalTSPY3 
Broad Tumor PortalTSPY3
OASIS PortalTSPY3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPY3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSPY3
Mutations and Diseases : HGMDTSPY3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSPY3
DgiDB (Drug Gene Interaction Database)TSPY3
DoCM (Curated mutations)TSPY3
CIViC (Clinical Interpretations of Variants in Cancer)TSPY3
Cancer3DTSPY3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTSPY3
MedgenTSPY3
Genetic Testing Registry TSPY3
NextProtP0CV98 [Medical]
GENETestsTSPY3
Target ValidationTSPY3
Huge Navigator TSPY3 [HugePedia]
ClinGenTSPY3
Clinical trials, drugs, therapy
MyCancerGenomeTSPY3
Protein Interactions : CTDTSPY3
Pharm GKB GenePA164727366
PharosP0CV98
Clinical trialTSPY3
Miscellaneous
canSAR (ICR)TSPY3
HarmonizomeTSPY3
DataMed IndexTSPY3
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSPY3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:27:11 CEST 2021

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