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TSPY4 (testis specific protein Y-linked 4)

Identity

Alias (NCBI)TSPY10
TSPY8
HGNC (Hugo) TSPY4
LocusID (NCBI) 728395
Atlas_Id 75250
Location Yp11.2  [Link to chromosome band Yp11]
Location_base_pair Starts at 9337510 and ends at 9340278 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSPY4   37287
Cards
Entrez_Gene (NCBI)TSPY4    testis specific protein Y-linked 4
AliasesTSPY10; TSPY8
GeneCards (Weizmann)TSPY4
Ensembl hg19 (Hinxton)ENSG00000233803 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233803 [Gene_View]  ENSG00000233803 [Sequence]  chrY:9337510-9340278 [Contig_View]  TSPY4 [Vega]
ICGC DataPortalENSG00000233803
TCGA cBioPortalTSPY4
AceView (NCBI)TSPY4
Genatlas (Paris)TSPY4
SOURCE (Princeton)TSPY4
Genetics Home Reference (NIH)TSPY4
Genomic and cartography
GoldenPath hg38 (UCSC)TSPY4  -     chrY:9337510-9340278 +  Yp11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPY4  -     Yp11.2   [Description]    (hg19-Feb_2009)
GoldenPathTSPY4 - Yp11.2 [CytoView hg19]  TSPY4 - Yp11.2 [CytoView hg38]
ImmunoBaseENSG00000233803
Genome Data Viewer NCBITSPY4 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA608988 AK093413 BX281192 DB035368 DB476671
RefSeq transcript (Entrez)NM_001164471
Consensus coding sequences : CCDS (NCBI)TSPY4
Gene ExpressionTSPY4 [ NCBI-GEO ]   TSPY4 [ EBI - ARRAY_EXPRESS ]   TSPY4 [ SEEK ]   TSPY4 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPY4 [ Firebrowse - Broad ]
GenevisibleExpression of TSPY4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728395
GTEX Portal (Tissue expression)TSPY4
Human Protein AtlasENSG00000233803-TSPY4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CV99   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CV99  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CV99
PhosPhoSitePlusP0CV99
Domains : Interpro (EBI)NAP-like_sf    NAP_family   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
Conserved Domain (NCBI)TSPY4
SuperfamilyP0CV99
AlphaFold pdb e-kbP0CV99   
Human Protein Atlas [tissue]ENSG00000233803-TSPY4 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)P0CV99
IntAct (EBI)P0CV99
BioGRIDTSPY4
STRING (EMBL)TSPY4
ZODIACTSPY4
Ontologies - Pathways
QuickGOP0CV99
Ontology : AmiGOchromatin  chromatin binding  nucleus  nucleosome assembly  spermatogenesis  gonadal mesoderm development  cell differentiation  histone binding  
Ontology : EGO-EBIchromatin  chromatin binding  nucleus  nucleosome assembly  spermatogenesis  gonadal mesoderm development  cell differentiation  histone binding  
NDEx NetworkTSPY4
Atlas of Cancer Signalling NetworkTSPY4
Wikipedia pathwaysTSPY4
Orthology - Evolution
OrthoDB728395
GeneTree (enSembl)ENSG00000233803
Phylogenetic Trees/Animal Genes : TreeFamTSPY4
Homologs : HomoloGeneTSPY4
Homology/Alignments : Family Browser (UCSC)TSPY4
Gene fusions - Rearrangements
Fusion : QuiverTSPY4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPY4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPY4
dbVarTSPY4
ClinVarTSPY4
MonarchTSPY4
1000_GenomesTSPY4 
Exome Variant ServerTSPY4
GNOMAD BrowserENSG00000233803
Varsome BrowserTSPY4
ACMGTSPY4 variants
VarityP0CV99
Genomic Variants (DGV)TSPY4 [DGVbeta]
DECIPHERTSPY4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPY4 
Mutations
ICGC Data PortalTSPY4 
TCGA Data PortalTSPY4 
Broad Tumor PortalTSPY4
OASIS PortalTSPY4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPY4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSPY4
Mutations and Diseases : HGMDTSPY4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSPY4
DgiDB (Drug Gene Interaction Database)TSPY4
DoCM (Curated mutations)TSPY4
CIViC (Clinical Interpretations of Variants in Cancer)TSPY4
Cancer3DTSPY4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTSPY4
MedgenTSPY4
Genetic Testing Registry TSPY4
NextProtP0CV99 [Medical]
GENETestsTSPY4
Target ValidationTSPY4
Huge Navigator TSPY4 [HugePedia]
ClinGenTSPY4
Clinical trials, drugs, therapy
MyCancerGenomeTSPY4
Protein Interactions : CTDTSPY4
Pharm GKB GenePA165791608
PharosP0CV99
Clinical trialTSPY4
Miscellaneous
canSAR (ICR)TSPY4
HarmonizomeTSPY4
DataMed IndexTSPY4
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSPY4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:27:11 CEST 2021

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