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TSPY4 (testis specific protein, Y-linked 4)

Identity

Other aliasTSPY10
TSPY8
HGNC (Hugo) TSPY4
LocusID (NCBI) 728395
Atlas_Id 75250
Location Yp11.2  [Link to chromosome band Yp11]
Location_base_pair Starts at 9337510 and ends at 9340278 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPY4   37287
Cards
Entrez_Gene (NCBI)TSPY4  728395  testis specific protein, Y-linked 4
AliasesTSPY10; TSPY8
GeneCards (Weizmann)TSPY4
Ensembl hg19 (Hinxton)ENSG00000233803 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233803 [Gene_View]  chrY:9337510-9340278 [Contig_View]  TSPY4 [Vega]
ICGC DataPortalENSG00000233803
TCGA cBioPortalTSPY4
AceView (NCBI)TSPY4
Genatlas (Paris)TSPY4
WikiGenes728395
SOURCE (Princeton)TSPY4
Genetics Home Reference (NIH)TSPY4
Genomic and cartography
GoldenPath hg38 (UCSC)TSPY4  -     chrY:9337510-9340278 +  Yp11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPY4  -     Yp11.2   [Description]    (hg19-Feb_2009)
EnsemblTSPY4 - Yp11.2 [CytoView hg19]  TSPY4 - Yp11.2 [CytoView hg38]
Mapping of homologs : NCBITSPY4 [Mapview hg19]  TSPY4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA608988 AK093413 BX281192 DB035368 DB476671
RefSeq transcript (Entrez)NM_001164471
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPY4
Cluster EST : UnigeneHs.730364 [ NCBI ]
CGAP (NCI)Hs.730364
Alternative Splicing GalleryENSG00000233803
Gene ExpressionTSPY4 [ NCBI-GEO ]   TSPY4 [ EBI - ARRAY_EXPRESS ]   TSPY4 [ SEEK ]   TSPY4 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPY4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728395
GTEX Portal (Tissue expression)TSPY4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CV99   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CV99  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CV99
Splice isoforms : SwissVarP0CV99
PhosPhoSitePlusP0CV99
Domains : Interpro (EBI)NAP_family   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
Conserved Domain (NCBI)TSPY4
DMDM Disease mutations728395
Blocks (Seattle)TSPY4
SuperfamilyP0CV99
Human Protein AtlasENSG00000233803
Peptide AtlasP0CV99
Protein Interaction databases
DIP (DOE-UCLA)P0CV99
IntAct (EBI)P0CV99
FunCoupENSG00000233803
BioGRIDTSPY4
STRING (EMBL)TSPY4
ZODIACTSPY4
Ontologies - Pathways
QuickGOP0CV99
Ontology : AmiGOnucleus  cytoplasm  nucleosome assembly  spermatogenesis  gonadal mesoderm development  cell differentiation  
Ontology : EGO-EBInucleus  cytoplasm  nucleosome assembly  spermatogenesis  gonadal mesoderm development  cell differentiation  
NDEx NetworkTSPY4
Atlas of Cancer Signalling NetworkTSPY4
Wikipedia pathwaysTSPY4
Orthology - Evolution
OrthoDB728395
GeneTree (enSembl)ENSG00000233803
Phylogenetic Trees/Animal Genes : TreeFamTSPY4
HOVERGENP0CV99
HOGENOMP0CV99
Homologs : HomoloGeneTSPY4
Homology/Alignments : Family Browser (UCSC)TSPY4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPY4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPY4
dbVarTSPY4
ClinVarTSPY4
1000_GenomesTSPY4 
Exome Variant ServerTSPY4
ExAC (Exome Aggregation Consortium)TSPY4 (select the gene name)
Genetic variants : HAPMAP728395
Genomic Variants (DGV)TSPY4 [DGVbeta]
DECIPHERTSPY4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPY4 
Mutations
ICGC Data PortalTSPY4 
TCGA Data PortalTSPY4 
Broad Tumor PortalTSPY4
OASIS PortalTSPY4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPY4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPY4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPY4
DgiDB (Drug Gene Interaction Database)TSPY4
DoCM (Curated mutations)TSPY4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPY4 (select a term)
intoGenTSPY4
Cancer3DTSPY4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTSPY4
Genetic Testing Registry TSPY4
NextProtP0CV99 [Medical]
TSGene728395
GENETestsTSPY4
Target ValidationTSPY4
Huge Navigator TSPY4 [HugePedia]
snp3D : Map Gene to Disease728395
BioCentury BCIQTSPY4
ClinGenTSPY4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728395
Chemical/Pharm GKB GenePA165791608
Clinical trialTSPY4
Miscellaneous
canSAR (ICR)TSPY4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPY4
EVEXTSPY4
GoPubMedTSPY4
iHOPTSPY4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:45 CEST 2017

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