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TSPY8 (testis specific protein, Y-linked 8)

Identity

Other alias-
HGNC (Hugo) TSPY8
LocusID (NCBI) 728403
Atlas_Id 75251
Location Yp11.2  [Link to chromosome band Yp11]
Location_base_pair Starts at 9337510 and ends at 9340278 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPY8   37471
Cards
Entrez_Gene (NCBI)TSPY8  728403  testis specific protein, Y-linked 8
Aliases
GeneCards (Weizmann)TSPY8
Ensembl hg19 (Hinxton)ENSG00000229549 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229549 [Gene_View]  chrY:9337510-9340278 [Contig_View]  TSPY8 [Vega]
ICGC DataPortalENSG00000229549
TCGA cBioPortalTSPY8
AceView (NCBI)TSPY8
Genatlas (Paris)TSPY8
WikiGenes728403
SOURCE (Princeton)TSPY8
Genetics Home Reference (NIH)TSPY8
Genomic and cartography
GoldenPath hg38 (UCSC)TSPY8  -     chrY:9337510-9340278 +  Yp11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPY8  -     Yp11.2   [Description]    (hg19-Feb_2009)
EnsemblTSPY8 - Yp11.2 [CytoView hg19]  TSPY8 - Yp11.2 [CytoView hg38]
Mapping of homologs : NCBITSPY8 [Mapview hg19]  TSPY8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001243721
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPY8
Cluster EST : UnigeneHs.740264 [ NCBI ]
CGAP (NCI)Hs.740264
Alternative Splicing GalleryENSG00000229549
Gene ExpressionTSPY8 [ NCBI-GEO ]   TSPY8 [ EBI - ARRAY_EXPRESS ]   TSPY8 [ SEEK ]   TSPY8 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPY8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728403
GTEX Portal (Tissue expression)TSPY8
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CW00   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CW00  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CW00
Splice isoforms : SwissVarP0CW00
PhosPhoSitePlusP0CW00
Domains : Interpro (EBI)NAP_family   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
Conserved Domain (NCBI)TSPY8
DMDM Disease mutations728403
Blocks (Seattle)TSPY8
SuperfamilyP0CW00
Human Protein AtlasENSG00000229549
Peptide AtlasP0CW00
IPIIPI01009179   IPI00967667   IPI00642530   IPI00644066   
Protein Interaction databases
DIP (DOE-UCLA)P0CW00
IntAct (EBI)P0CW00
FunCoupENSG00000229549
BioGRIDTSPY8
STRING (EMBL)TSPY8
ZODIACTSPY8
Ontologies - Pathways
QuickGOP0CW00
Ontology : AmiGOnucleus  cytoplasm  nucleosome assembly  spermatogenesis  gonadal mesoderm development  cell differentiation  
Ontology : EGO-EBInucleus  cytoplasm  nucleosome assembly  spermatogenesis  gonadal mesoderm development  cell differentiation  
NDEx NetworkTSPY8
Atlas of Cancer Signalling NetworkTSPY8
Wikipedia pathwaysTSPY8
Orthology - Evolution
OrthoDB728403
GeneTree (enSembl)ENSG00000229549
Phylogenetic Trees/Animal Genes : TreeFamTSPY8
HOVERGENP0CW00
HOGENOMP0CW00
Homologs : HomoloGeneTSPY8
Homology/Alignments : Family Browser (UCSC)TSPY8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPY8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPY8
dbVarTSPY8
ClinVarTSPY8
1000_GenomesTSPY8 
Exome Variant ServerTSPY8
ExAC (Exome Aggregation Consortium)TSPY8 (select the gene name)
Genetic variants : HAPMAP728403
Genomic Variants (DGV)TSPY8 [DGVbeta]
DECIPHERTSPY8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPY8 
Mutations
ICGC Data PortalTSPY8 
TCGA Data PortalTSPY8 
Broad Tumor PortalTSPY8
OASIS PortalTSPY8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPY8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPY8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPY8
DgiDB (Drug Gene Interaction Database)TSPY8
DoCM (Curated mutations)TSPY8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPY8 (select a term)
intoGenTSPY8
Cancer3DTSPY8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTSPY8
Genetic Testing Registry TSPY8
NextProtP0CW00 [Medical]
TSGene728403
GENETestsTSPY8
Target ValidationTSPY8
Huge Navigator TSPY8 [HugePedia]
snp3D : Map Gene to Disease728403
BioCentury BCIQTSPY8
ClinGenTSPY8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728403
Chemical/Pharm GKB GenePA165791643
Clinical trialTSPY8
Miscellaneous
canSAR (ICR)TSPY8 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPY8
EVEXTSPY8
GoPubMedTSPY8
iHOPTSPY8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:45 CEST 2017

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