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TSPYL1 (TSPY like 1)

Identity

Alias_namesTSPYL
TSPY-like
Other alias
HGNC (Hugo) TSPYL1
LocusID (NCBI) 7259
Atlas_Id 75252
Location 6q22.1  [Link to chromosome band 6q22]
Location_base_pair Starts at 116274859 and ends at 116280117 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPYL1   12382
LRG (Locus Reference Genomic)LRG_862
Cards
Entrez_Gene (NCBI)TSPYL1  7259  TSPY like 1
AliasesTSPYL
GeneCards (Weizmann)TSPYL1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:116274859-116280117 [Contig_View]  TSPYL1 [Vega]
TCGA cBioPortalTSPYL1
AceView (NCBI)TSPYL1
Genatlas (Paris)TSPYL1
WikiGenes7259
SOURCE (Princeton)TSPYL1
Genetics Home Reference (NIH)TSPYL1
Genomic and cartography
GoldenPath hg38 (UCSC)TSPYL1  -     chr6:116274859-116280117 -  6q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPYL1  -     6q22.1   [Description]    (hg19-Feb_2009)
EnsemblTSPYL1 - 6q22.1 [CytoView hg19]  TSPYL1 - 6q22.1 [CytoView hg38]
Mapping of homologs : NCBITSPYL1 [Mapview hg19]  TSPYL1 [Mapview hg38]
OMIM604714   608800   
Gene and transcription
Genbank (Entrez)AF042181 AI861791 AJ420580 AK026849 AK096882
RefSeq transcript (Entrez)NM_003309
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPYL1
Cluster EST : UnigeneHs.744978 [ NCBI ]
CGAP (NCI)Hs.744978
Gene ExpressionTSPYL1 [ NCBI-GEO ]   TSPYL1 [ EBI - ARRAY_EXPRESS ]   TSPYL1 [ SEEK ]   TSPYL1 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPYL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7259
GTEX Portal (Tissue expression)TSPYL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0U9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0U9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0U9
Splice isoforms : SwissVarQ9H0U9
PhosPhoSitePlusQ9H0U9
Domains : Interpro (EBI)NAP_family   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
Conserved Domain (NCBI)TSPYL1
DMDM Disease mutations7259
Blocks (Seattle)TSPYL1
SuperfamilyQ9H0U9
Peptide AtlasQ9H0U9
IPIIPI01012287   IPI00164215   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0U9
IntAct (EBI)Q9H0U9
BioGRIDTSPYL1
STRING (EMBL)TSPYL1
ZODIACTSPYL1
Ontologies - Pathways
QuickGOQ9H0U9
Ontology : AmiGOnucleus  nucleolus  nucleosome assembly  biological_process  enzyme binding  
Ontology : EGO-EBInucleus  nucleolus  nucleosome assembly  biological_process  enzyme binding  
NDEx NetworkTSPYL1
Atlas of Cancer Signalling NetworkTSPYL1
Wikipedia pathwaysTSPYL1
Orthology - Evolution
OrthoDB7259
Phylogenetic Trees/Animal Genes : TreeFamTSPYL1
HOVERGENQ9H0U9
HOGENOMQ9H0U9
Homologs : HomoloGeneTSPYL1
Homology/Alignments : Family Browser (UCSC)TSPYL1
Gene fusions - Rearrangements
Fusion : QuiverTSPYL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPYL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPYL1
dbVarTSPYL1
ClinVarTSPYL1
1000_GenomesTSPYL1 
Exome Variant ServerTSPYL1
Varsome BrowserTSPYL1
Genetic variants : HAPMAP7259
Genomic Variants (DGV)TSPYL1 [DGVbeta]
DECIPHERTSPYL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPYL1 
Mutations
ICGC Data PortalTSPYL1 
TCGA Data PortalTSPYL1 
Broad Tumor PortalTSPYL1
OASIS PortalTSPYL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPYL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPYL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPYL1
DgiDB (Drug Gene Interaction Database)TSPYL1
DoCM (Curated mutations)TSPYL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPYL1 (select a term)
intoGenTSPYL1
Cancer3DTSPYL1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604714    608800   
Orphanet17779   
DisGeNETTSPYL1
MedgenTSPYL1
Genetic Testing Registry TSPYL1
NextProtQ9H0U9 [Medical]
TSGene7259
GENETestsTSPYL1
Target ValidationTSPYL1
Huge Navigator TSPYL1 [HugePedia]
snp3D : Map Gene to Disease7259
BioCentury BCIQTSPYL1
ClinGenTSPYL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7259
Chemical/Pharm GKB GenePA37050
Clinical trialTSPYL1
Miscellaneous
canSAR (ICR)TSPYL1 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPYL1
EVEXTSPYL1
GoPubMedTSPYL1
iHOPTSPYL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:36:56 CEST 2018

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