Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TSPYL2 (TSPY like 2)

Identity

Alias_symbol (synonym)SE20-4
HRIHFB2216
CTCL
DENTT
CDA1
CINAP
TSPX
Other aliasNP79
SE204
HGNC (Hugo) TSPYL2
LocusID (NCBI) 64061
Atlas_Id 42234
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 53082360 and ends at 53088546 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABHD4 (14q11.2) / TSPYL2 (Xp11.22)TSPYL2 (Xp11.22) / NCAM2 (21q21.1)TSPYL2 (Xp11.22) / NCL (2q37.1)
TSPYL2 (Xp11.22) / THBS1 (15q14)TSPYL2 (Xp11.22) / USP20 (9q34.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPYL2   24358
Cards
Entrez_Gene (NCBI)TSPYL2  64061  TSPY like 2
AliasesCDA1; CINAP; CTCL; DENTT; 
HRIHFB2216; NP79; SE204; TSPX
GeneCards (Weizmann)TSPYL2
Ensembl hg19 (Hinxton)ENSG00000184205 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184205 [Gene_View]  chrX:53082360-53088546 [Contig_View]  TSPYL2 [Vega]
ICGC DataPortalENSG00000184205
TCGA cBioPortalTSPYL2
AceView (NCBI)TSPYL2
Genatlas (Paris)TSPYL2
WikiGenes64061
SOURCE (Princeton)TSPYL2
Genetics Home Reference (NIH)TSPYL2
Genomic and cartography
GoldenPath hg38 (UCSC)TSPYL2  -     chrX:53082360-53088546 +  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPYL2  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblTSPYL2 - Xp11.22 [CytoView hg19]  TSPYL2 - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBITSPYL2 [Mapview hg19]  TSPYL2 [Mapview hg38]
OMIM300564   
Gene and transcription
Genbank (Entrez)AB015345 AB209182 AF254794 AF273046 AI208075
RefSeq transcript (Entrez)NM_022117
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPYL2
Cluster EST : UnigeneHs.592916 [ NCBI ]
CGAP (NCI)Hs.592916
Alternative Splicing GalleryENSG00000184205
Gene ExpressionTSPYL2 [ NCBI-GEO ]   TSPYL2 [ EBI - ARRAY_EXPRESS ]   TSPYL2 [ SEEK ]   TSPYL2 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPYL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64061
GTEX Portal (Tissue expression)TSPYL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2G4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2G4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2G4
Splice isoforms : SwissVarQ9H2G4
PhosPhoSitePlusQ9H2G4
Domains : Interpro (EBI)NAP_family   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
Conserved Domain (NCBI)TSPYL2
DMDM Disease mutations64061
Blocks (Seattle)TSPYL2
SuperfamilyQ9H2G4
Human Protein AtlasENSG00000184205
Peptide AtlasQ9H2G4
HPRD06713
IPIIPI00005465   IPI00902491   IPI00556191   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2G4
IntAct (EBI)Q9H2G4
FunCoupENSG00000184205
BioGRIDTSPYL2
STRING (EMBL)TSPYL2
ZODIACTSPYL2
Ontologies - Pathways
QuickGOQ9H2G4
Ontology : AmiGOrDNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  nucleosome assembly  transcription, DNA-templated  regulation of transcription, DNA-templated  cell cycle  negative regulation of DNA replication  regulation of signal transduction  covalent chromatin modification  negative regulation of cell growth  IRE1-mediated unfolded protein response  negative regulation of cell cycle  regulation of protein kinase activity  
Ontology : EGO-EBIrDNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  nucleosome assembly  transcription, DNA-templated  regulation of transcription, DNA-templated  cell cycle  negative regulation of DNA replication  regulation of signal transduction  covalent chromatin modification  negative regulation of cell growth  IRE1-mediated unfolded protein response  negative regulation of cell cycle  regulation of protein kinase activity  
NDEx NetworkTSPYL2
Atlas of Cancer Signalling NetworkTSPYL2
Wikipedia pathwaysTSPYL2
Orthology - Evolution
OrthoDB64061
GeneTree (enSembl)ENSG00000184205
Phylogenetic Trees/Animal Genes : TreeFamTSPYL2
HOVERGENQ9H2G4
HOGENOMQ9H2G4
Homologs : HomoloGeneTSPYL2
Homology/Alignments : Family Browser (UCSC)TSPYL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPYL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPYL2
dbVarTSPYL2
ClinVarTSPYL2
1000_GenomesTSPYL2 
Exome Variant ServerTSPYL2
ExAC (Exome Aggregation Consortium)TSPYL2 (select the gene name)
Genetic variants : HAPMAP64061
Genomic Variants (DGV)TSPYL2 [DGVbeta]
DECIPHERTSPYL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPYL2 
Mutations
ICGC Data PortalTSPYL2 
TCGA Data PortalTSPYL2 
Broad Tumor PortalTSPYL2
OASIS PortalTSPYL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPYL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPYL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch TSPYL2
DgiDB (Drug Gene Interaction Database)TSPYL2
DoCM (Curated mutations)TSPYL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPYL2 (select a term)
intoGenTSPYL2
Cancer3DTSPYL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300564   
Orphanet
MedgenTSPYL2
Genetic Testing Registry TSPYL2
NextProtQ9H2G4 [Medical]
TSGene64061
GENETestsTSPYL2
Target ValidationTSPYL2
Huge Navigator TSPYL2 [HugePedia]
snp3D : Map Gene to Disease64061
BioCentury BCIQTSPYL2
ClinGenTSPYL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64061
Chemical/Pharm GKB GenePA134930188
Clinical trialTSPYL2
Miscellaneous
canSAR (ICR)TSPYL2 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPYL2
EVEXTSPYL2
GoPubMedTSPYL2
iHOPTSPYL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:36:38 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.