Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TSPYL4 (TSPY like 4)

Identity

Alias (NCBI)dJ486I3.2
HGNC (Hugo) TSPYL4
HGNC Alias symbdJ486I3.2
KIAA0721
LocusID (NCBI) 23270
Atlas_Id 75253
Location 6q22.1  [Link to chromosome band 6q22]
Location_base_pair Starts at 116249968 and ends at 116254075 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSPYL4   21559
Cards
Entrez_Gene (NCBI)TSPYL4    TSPY like 4
AliasesdJ486I3.2
GeneCards (Weizmann)TSPYL4
Ensembl hg19 (Hinxton)ENSG00000187189 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187189 [Gene_View]  ENSG00000187189 [Sequence]  chr6:116249968-116254075 [Contig_View]  TSPYL4 [Vega]
ICGC DataPortalENSG00000187189
TCGA cBioPortalTSPYL4
AceView (NCBI)TSPYL4
Genatlas (Paris)TSPYL4
SOURCE (Princeton)TSPYL4
Genetics Home Reference (NIH)TSPYL4
Genomic and cartography
GoldenPath hg38 (UCSC)TSPYL4  -     chr6:116249968-116254075 -  6q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPYL4  -     6q22.1   [Description]    (hg19-Feb_2009)
GoldenPathTSPYL4 - 6q22.1 [CytoView hg19]  TSPYL4 - 6q22.1 [CytoView hg38]
ImmunoBaseENSG00000187189
Genome Data Viewer NCBITSPYL4 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB018264 AJ420569 AK091559 AK302542 AL049347
RefSeq transcript (Entrez)NM_021648
Consensus coding sequences : CCDS (NCBI)TSPYL4
Gene ExpressionTSPYL4 [ NCBI-GEO ]   TSPYL4 [ EBI - ARRAY_EXPRESS ]   TSPYL4 [ SEEK ]   TSPYL4 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPYL4 [ Firebrowse - Broad ]
GenevisibleExpression of TSPYL4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23270
GTEX Portal (Tissue expression)TSPYL4
Human Protein AtlasENSG00000187189-TSPYL4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJ04   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJ04  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJ04
PhosPhoSitePlusQ9UJ04
Domains : Interpro (EBI)NAP-like_sf    NAP_family   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
Conserved Domain (NCBI)TSPYL4
SuperfamilyQ9UJ04
AlphaFold pdb e-kbQ9UJ04   
Human Protein Atlas [tissue]ENSG00000187189-TSPYL4 [tissue]
HPRD18236
Protein Interaction databases
DIP (DOE-UCLA)Q9UJ04
IntAct (EBI)Q9UJ04
BioGRIDTSPYL4
STRING (EMBL)TSPYL4
ZODIACTSPYL4
Ontologies - Pathways
QuickGOQ9UJ04
Ontology : AmiGOchromatin  chromatin binding  protein binding  nucleus  nucleosome assembly  histone binding  
Ontology : EGO-EBIchromatin  chromatin binding  protein binding  nucleus  nucleosome assembly  histone binding  
NDEx NetworkTSPYL4
Atlas of Cancer Signalling NetworkTSPYL4
Wikipedia pathwaysTSPYL4
Orthology - Evolution
OrthoDB23270
GeneTree (enSembl)ENSG00000187189
Phylogenetic Trees/Animal Genes : TreeFamTSPYL4
Homologs : HomoloGeneTSPYL4
Homology/Alignments : Family Browser (UCSC)TSPYL4
Gene fusions - Rearrangements
Fusion : QuiverTSPYL4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPYL4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPYL4
dbVarTSPYL4
ClinVarTSPYL4
MonarchTSPYL4
1000_GenomesTSPYL4 
Exome Variant ServerTSPYL4
GNOMAD BrowserENSG00000187189
Varsome BrowserTSPYL4
ACMGTSPYL4 variants
VarityQ9UJ04
Genomic Variants (DGV)TSPYL4 [DGVbeta]
DECIPHERTSPYL4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPYL4 
Mutations
ICGC Data PortalTSPYL4 
TCGA Data PortalTSPYL4 
Broad Tumor PortalTSPYL4
OASIS PortalTSPYL4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPYL4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSPYL4
Mutations and Diseases : HGMDTSPYL4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSPYL4
DgiDB (Drug Gene Interaction Database)TSPYL4
DoCM (Curated mutations)TSPYL4
CIViC (Clinical Interpretations of Variants in Cancer)TSPYL4
Cancer3DTSPYL4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTSPYL4
MedgenTSPYL4
Genetic Testing Registry TSPYL4
NextProtQ9UJ04 [Medical]
GENETestsTSPYL4
Target ValidationTSPYL4
Huge Navigator TSPYL4 [HugePedia]
ClinGenTSPYL4
Clinical trials, drugs, therapy
MyCancerGenomeTSPYL4
Protein Interactions : CTDTSPYL4
Pharm GKB GenePA134942080
PharosQ9UJ04
Clinical trialTSPYL4
Miscellaneous
canSAR (ICR)TSPYL4
HarmonizomeTSPYL4
DataMed IndexTSPYL4
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSPYL4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:27:12 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.