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TSPYL4 (TSPY like 4)

Identity

Alias_symbol (synonym)dJ486I3.2
KIAA0721
Other alias
HGNC (Hugo) TSPYL4
LocusID (NCBI) 23270
Atlas_Id 75253
Location 6q22.1  [Link to chromosome band 6q22]
Location_base_pair Starts at 116249968 and ends at 116254098 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPYL4   21559
Cards
Entrez_Gene (NCBI)TSPYL4  23270  TSPY like 4
AliasesdJ486I3.2
GeneCards (Weizmann)TSPYL4
Ensembl hg19 (Hinxton)ENSG00000187189 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187189 [Gene_View]  ENSG00000187189 [Sequence]  chr6:116249968-116254098 [Contig_View]  TSPYL4 [Vega]
ICGC DataPortalENSG00000187189
TCGA cBioPortalTSPYL4
AceView (NCBI)TSPYL4
Genatlas (Paris)TSPYL4
WikiGenes23270
SOURCE (Princeton)TSPYL4
Genetics Home Reference (NIH)TSPYL4
Genomic and cartography
GoldenPath hg38 (UCSC)TSPYL4  -     chr6:116249968-116254098 -  6q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPYL4  -     6q22.1   [Description]    (hg19-Feb_2009)
EnsemblTSPYL4 - 6q22.1 [CytoView hg19]  TSPYL4 - 6q22.1 [CytoView hg38]
Mapping of homologs : NCBITSPYL4 [Mapview hg19]  TSPYL4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB018264 AJ420569 AK091559 AK302542 AL049347
RefSeq transcript (Entrez)NM_021648
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPYL4
Cluster EST : UnigeneHs.284141 [ NCBI ]
CGAP (NCI)Hs.284141
Alternative Splicing GalleryENSG00000187189
Gene ExpressionTSPYL4 [ NCBI-GEO ]   TSPYL4 [ EBI - ARRAY_EXPRESS ]   TSPYL4 [ SEEK ]   TSPYL4 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPYL4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23270
GTEX Portal (Tissue expression)TSPYL4
Human Protein AtlasENSG00000187189-TSPYL4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJ04   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJ04  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJ04
Splice isoforms : SwissVarQ9UJ04
PhosPhoSitePlusQ9UJ04
Domains : Interpro (EBI)NAP_family   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
Conserved Domain (NCBI)TSPYL4
DMDM Disease mutations23270
Blocks (Seattle)TSPYL4
SuperfamilyQ9UJ04
Human Protein Atlas [tissue]ENSG00000187189-TSPYL4 [tissue]
Peptide AtlasQ9UJ04
HPRD18236
IPIIPI00012528   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJ04
IntAct (EBI)Q9UJ04
FunCoupENSG00000187189
BioGRIDTSPYL4
STRING (EMBL)TSPYL4
ZODIACTSPYL4
Ontologies - Pathways
QuickGOQ9UJ04
Ontology : AmiGOprotein binding  nucleus  nucleosome assembly  
Ontology : EGO-EBIprotein binding  nucleus  nucleosome assembly  
NDEx NetworkTSPYL4
Atlas of Cancer Signalling NetworkTSPYL4
Wikipedia pathwaysTSPYL4
Orthology - Evolution
OrthoDB23270
GeneTree (enSembl)ENSG00000187189
Phylogenetic Trees/Animal Genes : TreeFamTSPYL4
HOVERGENQ9UJ04
HOGENOMQ9UJ04
Homologs : HomoloGeneTSPYL4
Homology/Alignments : Family Browser (UCSC)TSPYL4
Gene fusions - Rearrangements
Fusion : QuiverTSPYL4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPYL4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPYL4
dbVarTSPYL4
ClinVarTSPYL4
1000_GenomesTSPYL4 
Exome Variant ServerTSPYL4
ExAC (Exome Aggregation Consortium)ENSG00000187189
GNOMAD BrowserENSG00000187189
Varsome BrowserTSPYL4
Genetic variants : HAPMAP23270
Genomic Variants (DGV)TSPYL4 [DGVbeta]
DECIPHERTSPYL4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPYL4 
Mutations
ICGC Data PortalTSPYL4 
TCGA Data PortalTSPYL4 
Broad Tumor PortalTSPYL4
OASIS PortalTSPYL4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPYL4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPYL4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPYL4
DgiDB (Drug Gene Interaction Database)TSPYL4
DoCM (Curated mutations)TSPYL4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPYL4 (select a term)
intoGenTSPYL4
Cancer3DTSPYL4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTSPYL4
MedgenTSPYL4
Genetic Testing Registry TSPYL4
NextProtQ9UJ04 [Medical]
TSGene23270
GENETestsTSPYL4
Target ValidationTSPYL4
Huge Navigator TSPYL4 [HugePedia]
snp3D : Map Gene to Disease23270
BioCentury BCIQTSPYL4
ClinGenTSPYL4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23270
Chemical/Pharm GKB GenePA134942080
Clinical trialTSPYL4
Miscellaneous
canSAR (ICR)TSPYL4 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPYL4
EVEXTSPYL4
GoPubMedTSPYL4
iHOPTSPYL4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Jul 30 14:36:57 CEST 2018

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