Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TSPYL5 (TSPY-like 5)

Identity

Alias_symbol (synonym)KIAA1750
Other alias-
HGNC (Hugo) TSPYL5
LocusID (NCBI) 85453
Atlas_Id 50228
Location 8q22.1  [Link to chromosome band 8q22]
Location_base_pair Starts at 98285714 and ends at 98290176 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TSPYL5 (8q22.1) / TSPYL5 (8q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPYL5   29367
Cards
Entrez_Gene (NCBI)TSPYL5  85453  TSPY-like 5
Aliases
GeneCards (Weizmann)TSPYL5
Ensembl hg19 (Hinxton)ENSG00000180543 [Gene_View]  chr8:98285714-98290176 [Contig_View]  TSPYL5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000180543 [Gene_View]  chr8:98285714-98290176 [Contig_View]  TSPYL5 [Vega]
ICGC DataPortalENSG00000180543
TCGA cBioPortalTSPYL5
AceView (NCBI)TSPYL5
Genatlas (Paris)TSPYL5
WikiGenes85453
SOURCE (Princeton)TSPYL5
Genetics Home Reference (NIH)TSPYL5
Genomic and cartography
GoldenPath hg19 (UCSC)TSPYL5  -     chr8:98285714-98290176 -  8q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TSPYL5  -     8q22.1   [Description]    (hg38-Dec_2013)
EnsemblTSPYL5 - 8q22.1 [CytoView hg19]  TSPYL5 - 8q22.1 [CytoView hg38]
Mapping of homologs : NCBITSPYL5 [Mapview hg19]  TSPYL5 [Mapview hg38]
OMIM614721   
Gene and transcription
Genbank (Entrez)AB051537 AK091445 AK092272 AL080059 BC045630
RefSeq transcript (Entrez)NM_033512
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)TSPYL5
Cluster EST : UnigeneHs.173094 [ NCBI ]
CGAP (NCI)Hs.173094
Alternative Splicing GalleryENSG00000180543
Gene ExpressionTSPYL5 [ NCBI-GEO ]   TSPYL5 [ EBI - ARRAY_EXPRESS ]   TSPYL5 [ SEEK ]   TSPYL5 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPYL5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85453
GTEX Portal (Tissue expression)TSPYL5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VY4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VY4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VY4
Splice isoforms : SwissVarQ86VY4
PhosPhoSitePlusQ86VY4
Domains : Interpro (EBI)NAP_family   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
Conserved Domain (NCBI)TSPYL5
DMDM Disease mutations85453
Blocks (Seattle)TSPYL5
SuperfamilyQ86VY4
Human Protein AtlasENSG00000180543
Peptide AtlasQ86VY4
HPRD15576
IPIIPI00028279   
Protein Interaction databases
DIP (DOE-UCLA)Q86VY4
IntAct (EBI)Q86VY4
FunCoupENSG00000180543
BioGRIDTSPYL5
STRING (EMBL)TSPYL5
ZODIACTSPYL5
Ontologies - Pathways
QuickGOQ86VY4
Ontology : AmiGOprotein binding  nucleus  nucleosome assembly  positive regulation of cell proliferation  positive regulation of cell proliferation  positive regulation of protein ubiquitination  regulation of growth  positive regulation of protein kinase B signaling  cellular response to gamma radiation  
Ontology : EGO-EBIprotein binding  nucleus  nucleosome assembly  positive regulation of cell proliferation  positive regulation of cell proliferation  positive regulation of protein ubiquitination  regulation of growth  positive regulation of protein kinase B signaling  cellular response to gamma radiation  
NDEx NetworkTSPYL5
Atlas of Cancer Signalling NetworkTSPYL5
Wikipedia pathwaysTSPYL5
Orthology - Evolution
OrthoDB85453
GeneTree (enSembl)ENSG00000180543
Phylogenetic Trees/Animal Genes : TreeFamTSPYL5
HOVERGENQ86VY4
HOGENOMQ86VY4
Homologs : HomoloGeneTSPYL5
Homology/Alignments : Family Browser (UCSC)TSPYL5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPYL5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPYL5
dbVarTSPYL5
ClinVarTSPYL5
1000_GenomesTSPYL5 
Exome Variant ServerTSPYL5
ExAC (Exome Aggregation Consortium)TSPYL5 (select the gene name)
Genetic variants : HAPMAP85453
Genomic Variants (DGV)TSPYL5 [DGVbeta]
DECIPHER (Syndromes)8:98285714-98290176  ENSG00000180543
CONAN: Copy Number AnalysisTSPYL5 
Mutations
ICGC Data PortalTSPYL5 
TCGA Data PortalTSPYL5 
Broad Tumor PortalTSPYL5
OASIS PortalTSPYL5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPYL5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPYL5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPYL5
DgiDB (Drug Gene Interaction Database)TSPYL5
DoCM (Curated mutations)TSPYL5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPYL5 (select a term)
intoGenTSPYL5
Cancer3DTSPYL5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614721   
Orphanet
MedgenTSPYL5
Genetic Testing Registry TSPYL5
NextProtQ86VY4 [Medical]
TSGene85453
GENETestsTSPYL5
Huge Navigator TSPYL5 [HugePedia]
snp3D : Map Gene to Disease85453
BioCentury BCIQTSPYL5
ClinGenTSPYL5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85453
Chemical/Pharm GKB GenePA128394738
Clinical trialTSPYL5
Miscellaneous
canSAR (ICR)TSPYL5 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPYL5
EVEXTSPYL5
GoPubMedTSPYL5
iHOPTSPYL5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:23:43 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.