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TSPYL6 (TSPY like 6)

Identity

Alias (NCBI)-
HGNC (Hugo) TSPYL6
LocusID (NCBI) 388951
Atlas_Id 57372
Location 2p16.2  [Link to chromosome band 2p16]
Location_base_pair Starts at 54253178 and ends at 54256229 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSPYL6   14521
Cards
Entrez_Gene (NCBI)TSPYL6    TSPY like 6
Aliases
GeneCards (Weizmann)TSPYL6
Ensembl hg19 (Hinxton)ENSG00000178021 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178021 [Gene_View]  ENSG00000178021 [Sequence]  chr2:54253178-54256229 [Contig_View]  TSPYL6 [Vega]
ICGC DataPortalENSG00000178021
TCGA cBioPortalTSPYL6
AceView (NCBI)TSPYL6
Genatlas (Paris)TSPYL6
SOURCE (Princeton)TSPYL6
Genetics Home Reference (NIH)TSPYL6
Genomic and cartography
GoldenPath hg38 (UCSC)TSPYL6  -     chr2:54253178-54256229 -  2p16.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPYL6  -     2p16.2   [Description]    (hg19-Feb_2009)
GoldenPathTSPYL6 - 2p16.2 [CytoView hg19]  TSPYL6 - 2p16.2 [CytoView hg38]
ImmunoBaseENSG00000178021
Genome Data Viewer NCBITSPYL6 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK097417 AL117628 BC068576 DB073493 HM005524
RefSeq transcript (Entrez)NM_001003937
Consensus coding sequences : CCDS (NCBI)TSPYL6
Gene ExpressionTSPYL6 [ NCBI-GEO ]   TSPYL6 [ EBI - ARRAY_EXPRESS ]   TSPYL6 [ SEEK ]   TSPYL6 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPYL6 [ Firebrowse - Broad ]
GenevisibleExpression of TSPYL6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388951
GTEX Portal (Tissue expression)TSPYL6
Human Protein AtlasENSG00000178021-TSPYL6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N831   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N831  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N831
PhosPhoSitePlusQ8N831
Domains : Interpro (EBI)NAP-like_sf    NAP_family   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
Conserved Domain (NCBI)TSPYL6
SuperfamilyQ8N831
AlphaFold pdb e-kbQ8N831   
Human Protein Atlas [tissue]ENSG00000178021-TSPYL6 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q8N831
IntAct (EBI)Q8N831
BioGRIDTSPYL6
STRING (EMBL)TSPYL6
ZODIACTSPYL6
Ontologies - Pathways
QuickGOQ8N831
Ontology : AmiGOchromatin  chromatin binding  protein binding  nucleus  nucleosome assembly  histone binding  
Ontology : EGO-EBIchromatin  chromatin binding  protein binding  nucleus  nucleosome assembly  histone binding  
NDEx NetworkTSPYL6
Atlas of Cancer Signalling NetworkTSPYL6
Wikipedia pathwaysTSPYL6
Orthology - Evolution
OrthoDB388951
GeneTree (enSembl)ENSG00000178021
Phylogenetic Trees/Animal Genes : TreeFamTSPYL6
Homologs : HomoloGeneTSPYL6
Homology/Alignments : Family Browser (UCSC)TSPYL6
Gene fusions - Rearrangements
Fusion : QuiverTSPYL6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPYL6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPYL6
dbVarTSPYL6
ClinVarTSPYL6
MonarchTSPYL6
1000_GenomesTSPYL6 
Exome Variant ServerTSPYL6
GNOMAD BrowserENSG00000178021
Varsome BrowserTSPYL6
ACMGTSPYL6 variants
VarityQ8N831
Genomic Variants (DGV)TSPYL6 [DGVbeta]
DECIPHERTSPYL6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPYL6 
Mutations
ICGC Data PortalTSPYL6 
TCGA Data PortalTSPYL6 
Broad Tumor PortalTSPYL6
OASIS PortalTSPYL6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPYL6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSPYL6
Mutations and Diseases : HGMDTSPYL6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSPYL6
DgiDB (Drug Gene Interaction Database)TSPYL6
DoCM (Curated mutations)TSPYL6
CIViC (Clinical Interpretations of Variants in Cancer)TSPYL6
Cancer3DTSPYL6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTSPYL6
MedgenTSPYL6
Genetic Testing Registry TSPYL6
NextProtQ8N831 [Medical]
GENETestsTSPYL6
Target ValidationTSPYL6
Huge Navigator TSPYL6 [HugePedia]
ClinGenTSPYL6
Clinical trials, drugs, therapy
MyCancerGenomeTSPYL6
Protein Interactions : CTDTSPYL6
Pharm GKB GenePA134953500
PharosQ8N831
Clinical trialTSPYL6
Miscellaneous
canSAR (ICR)TSPYL6
HarmonizomeTSPYL6
DataMed IndexTSPYL6
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSPYL6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:36:41 CEST 2021

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