Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TSPYL6 (TSPY like 6)

Identity

Other alias-
HGNC (Hugo) TSPYL6
LocusID (NCBI) 388951
Atlas_Id 75254
Location 2p16.2  [Link to chromosome band 2p16]
Location_base_pair Starts at 54253178 and ends at 54256272 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSPYL6   14521
Cards
Entrez_Gene (NCBI)TSPYL6  388951  TSPY like 6
Aliases
GeneCards (Weizmann)TSPYL6
Ensembl hg19 (Hinxton)ENSG00000178021 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178021 [Gene_View]  chr2:54253178-54256272 [Contig_View]  TSPYL6 [Vega]
ICGC DataPortalENSG00000178021
TCGA cBioPortalTSPYL6
AceView (NCBI)TSPYL6
Genatlas (Paris)TSPYL6
WikiGenes388951
SOURCE (Princeton)TSPYL6
Genetics Home Reference (NIH)TSPYL6
Genomic and cartography
GoldenPath hg38 (UCSC)TSPYL6  -     chr2:54253178-54256272 -  2p16.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPYL6  -     2p16.2   [Description]    (hg19-Feb_2009)
EnsemblTSPYL6 - 2p16.2 [CytoView hg19]  TSPYL6 - 2p16.2 [CytoView hg38]
Mapping of homologs : NCBITSPYL6 [Mapview hg19]  TSPYL6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097417 AL117628 BC068576 DB073493 HM005524
RefSeq transcript (Entrez)NM_001003937
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPYL6
Cluster EST : UnigeneHs.620508 [ NCBI ]
CGAP (NCI)Hs.620508
Alternative Splicing GalleryENSG00000178021
Gene ExpressionTSPYL6 [ NCBI-GEO ]   TSPYL6 [ EBI - ARRAY_EXPRESS ]   TSPYL6 [ SEEK ]   TSPYL6 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPYL6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388951
GTEX Portal (Tissue expression)TSPYL6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N831   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N831  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N831
Splice isoforms : SwissVarQ8N831
PhosPhoSitePlusQ8N831
Domains : Interpro (EBI)NAP_family   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
Conserved Domain (NCBI)TSPYL6
DMDM Disease mutations388951
Blocks (Seattle)TSPYL6
SuperfamilyQ8N831
Human Protein AtlasENSG00000178021
Peptide AtlasQ8N831
HPRD11652
IPIIPI00167308   
Protein Interaction databases
DIP (DOE-UCLA)Q8N831
IntAct (EBI)Q8N831
FunCoupENSG00000178021
BioGRIDTSPYL6
STRING (EMBL)TSPYL6
ZODIACTSPYL6
Ontologies - Pathways
QuickGOQ8N831
Ontology : AmiGOnucleus  nucleosome assembly  
Ontology : EGO-EBInucleus  nucleosome assembly  
NDEx NetworkTSPYL6
Atlas of Cancer Signalling NetworkTSPYL6
Wikipedia pathwaysTSPYL6
Orthology - Evolution
OrthoDB388951
GeneTree (enSembl)ENSG00000178021
Phylogenetic Trees/Animal Genes : TreeFamTSPYL6
HOVERGENQ8N831
HOGENOMQ8N831
Homologs : HomoloGeneTSPYL6
Homology/Alignments : Family Browser (UCSC)TSPYL6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPYL6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPYL6
dbVarTSPYL6
ClinVarTSPYL6
1000_GenomesTSPYL6 
Exome Variant ServerTSPYL6
ExAC (Exome Aggregation Consortium)TSPYL6 (select the gene name)
Genetic variants : HAPMAP388951
Genomic Variants (DGV)TSPYL6 [DGVbeta]
DECIPHERTSPYL6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPYL6 
Mutations
ICGC Data PortalTSPYL6 
TCGA Data PortalTSPYL6 
Broad Tumor PortalTSPYL6
OASIS PortalTSPYL6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPYL6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSPYL6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSPYL6
DgiDB (Drug Gene Interaction Database)TSPYL6
DoCM (Curated mutations)TSPYL6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPYL6 (select a term)
intoGenTSPYL6
Cancer3DTSPYL6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTSPYL6
Genetic Testing Registry TSPYL6
NextProtQ8N831 [Medical]
TSGene388951
GENETestsTSPYL6
Target ValidationTSPYL6
Huge Navigator TSPYL6 [HugePedia]
snp3D : Map Gene to Disease388951
BioCentury BCIQTSPYL6
ClinGenTSPYL6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388951
Chemical/Pharm GKB GenePA134953500
Clinical trialTSPYL6
Miscellaneous
canSAR (ICR)TSPYL6 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPYL6
EVEXTSPYL6
GoPubMedTSPYL6
iHOPTSPYL6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:47:25 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.