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TSR1 (TSR1, ribosome maturation factor)

Identity

Alias_namesTSR1, 20S rRNA accumulation, homolog (yeast)
Alias_symbol (synonym)FLJ10534
Other alias-
HGNC (Hugo) TSR1
LocusID (NCBI) 55720
Atlas_Id 75255
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 2322688 and ends at 2337384 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSR1   25542
Cards
Entrez_Gene (NCBI)TSR1  55720  TSR1, ribosome maturation factor
Aliases
GeneCards (Weizmann)TSR1
Ensembl hg19 (Hinxton)ENSG00000167721 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167721 [Gene_View]  chr17:2322688-2337384 [Contig_View]  TSR1 [Vega]
ICGC DataPortalENSG00000167721
TCGA cBioPortalTSR1
AceView (NCBI)TSR1
Genatlas (Paris)TSR1
WikiGenes55720
SOURCE (Princeton)TSR1
Genetics Home Reference (NIH)TSR1
Genomic and cartography
GoldenPath hg38 (UCSC)TSR1  -     chr17:2322688-2337384 -  17p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSR1  -     17p13.3   [Description]    (hg19-Feb_2009)
EnsemblTSR1 - 17p13.3 [CytoView hg19]  TSR1 - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBITSR1 [Mapview hg19]  TSR1 [Mapview hg38]
OMIM611214   
Gene and transcription
Genbank (Entrez)AB037822 AK001396 AK026565 BC019090 BC110851
RefSeq transcript (Entrez)NM_018128
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSR1
Cluster EST : UnigeneHs.388170 [ NCBI ]
CGAP (NCI)Hs.388170
Alternative Splicing GalleryENSG00000167721
Gene ExpressionTSR1 [ NCBI-GEO ]   TSR1 [ EBI - ARRAY_EXPRESS ]   TSR1 [ SEEK ]   TSR1 [ MEM ]
Gene Expression Viewer (FireBrowse)TSR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55720
GTEX Portal (Tissue expression)TSR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2NL82   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2NL82  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2NL82
Splice isoforms : SwissVarQ2NL82
PhosPhoSitePlusQ2NL82
Domaine pattern : Prosite (Expaxy)G_BMS1 (PS51714)   
Domains : Interpro (EBI)AARP2CN    BMS1_TSR1_C    G_Bms1/Tsr1_dom   
Domain families : Pfam (Sanger)AARP2CN (PF08142)    RIBIOP_C (PF04950)   
Domain families : Pfam (NCBI)pfam08142    pfam04950   
Domain families : Smart (EMBL)AARP2CN (SM00785)  DUF663 (SM01362)  
Conserved Domain (NCBI)TSR1
DMDM Disease mutations55720
Blocks (Seattle)TSR1
SuperfamilyQ2NL82
Human Protein AtlasENSG00000167721
Peptide AtlasQ2NL82
HPRD07681
IPIIPI00292894   IPI01013246   
Protein Interaction databases
DIP (DOE-UCLA)Q2NL82
IntAct (EBI)Q2NL82
FunCoupENSG00000167721
BioGRIDTSR1
STRING (EMBL)TSR1
ZODIACTSR1
Ontologies - Pathways
QuickGOQ2NL82
Ontology : AmiGOmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  GTPase activity  GTP binding  nucleoplasm  nucleolus  cytosol  rRNA processing  preribosome, small subunit precursor  U3 snoRNA binding  ribosome assembly  
Ontology : EGO-EBImaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  GTPase activity  GTP binding  nucleoplasm  nucleolus  cytosol  rRNA processing  preribosome, small subunit precursor  U3 snoRNA binding  ribosome assembly  
NDEx NetworkTSR1
Atlas of Cancer Signalling NetworkTSR1
Wikipedia pathwaysTSR1
Orthology - Evolution
OrthoDB55720
GeneTree (enSembl)ENSG00000167721
Phylogenetic Trees/Animal Genes : TreeFamTSR1
HOVERGENQ2NL82
HOGENOMQ2NL82
Homologs : HomoloGeneTSR1
Homology/Alignments : Family Browser (UCSC)TSR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSR1
dbVarTSR1
ClinVarTSR1
1000_GenomesTSR1 
Exome Variant ServerTSR1
ExAC (Exome Aggregation Consortium)TSR1 (select the gene name)
Genetic variants : HAPMAP55720
Genomic Variants (DGV)TSR1 [DGVbeta]
DECIPHERTSR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSR1 
Mutations
ICGC Data PortalTSR1 
TCGA Data PortalTSR1 
Broad Tumor PortalTSR1
OASIS PortalTSR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSR1
DgiDB (Drug Gene Interaction Database)TSR1
DoCM (Curated mutations)TSR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSR1 (select a term)
intoGenTSR1
Cancer3DTSR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611214   
Orphanet
MedgenTSR1
Genetic Testing Registry TSR1
NextProtQ2NL82 [Medical]
TSGene55720
GENETestsTSR1
Target ValidationTSR1
Huge Navigator TSR1 [HugePedia]
snp3D : Map Gene to Disease55720
BioCentury BCIQTSR1
ClinGenTSR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55720
Chemical/Pharm GKB GenePA142670691
Clinical trialTSR1
Miscellaneous
canSAR (ICR)TSR1 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSR1
EVEXTSR1
GoPubMedTSR1
iHOPTSR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:45 CEST 2017

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