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TSR2 (TSR2 ribosome maturation factor)

Identity

Alias (NCBI)DBA14
DT1P1A10
WGG1
HGNC (Hugo) TSR2
HGNC Alias symbDT1P1A10
RP1-112K5.2
WGG1
HGNC Alias nameWGG motif containing 1
HGNC Previous nameTSR2, 20S rRNA accumulation, homolog (S. cerevisiae)
LocusID (NCBI) 90121
Atlas_Id 75256
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 54440404 and ends at 54448027 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
STARD13 (13q13.1) / TSR2 (Xp11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSR2   25455
Cards
Entrez_Gene (NCBI)TSR2    TSR2 ribosome maturation factor
AliasesDBA14; DT1P1A10; WGG1
GeneCards (Weizmann)TSR2
Ensembl hg19 (Hinxton)ENSG00000158526 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158526 [Gene_View]  ENSG00000158526 [Sequence]  chrX:54440404-54448027 [Contig_View]  TSR2 [Vega]
ICGC DataPortalENSG00000158526
TCGA cBioPortalTSR2
AceView (NCBI)TSR2
Genatlas (Paris)TSR2
SOURCE (Princeton)TSR2
Genetics Home Reference (NIH)TSR2
Genomic and cartography
GoldenPath hg38 (UCSC)TSR2  -     chrX:54440404-54448027 +  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSR2  -     Xp11.22   [Description]    (hg19-Feb_2009)
GoldenPathTSR2 - Xp11.22 [CytoView hg19]  TSR2 - Xp11.22 [CytoView hg38]
ImmunoBaseENSG00000158526
Genome Data Viewer NCBITSR2 [Mapview hg19]  
OMIM300945   300946   
Gene and transcription
Genbank (Entrez)AA251347 BC007699 BC011825 BI488794 U92980
RefSeq transcript (Entrez)NM_001346789 NM_001346790 NM_001346791 NM_001346792 NM_058163
Consensus coding sequences : CCDS (NCBI)TSR2
Gene ExpressionTSR2 [ NCBI-GEO ]   TSR2 [ EBI - ARRAY_EXPRESS ]   TSR2 [ SEEK ]   TSR2 [ MEM ]
Gene Expression Viewer (FireBrowse)TSR2 [ Firebrowse - Broad ]
GenevisibleExpression of TSR2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90121
GTEX Portal (Tissue expression)TSR2
Human Protein AtlasENSG00000158526-TSR2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969E8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969E8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969E8
PhosPhoSitePlusQ969E8
Domains : Interpro (EBI)Pre-rRNA_process_TSR2   
Domain families : Pfam (Sanger)WGG (PF10273)   
Domain families : Pfam (NCBI)pfam10273   
Conserved Domain (NCBI)TSR2
SuperfamilyQ969E8
AlphaFold pdb e-kbQ969E8   
Human Protein Atlas [tissue]ENSG00000158526-TSR2 [tissue]
HPRD06493
Protein Interaction databases
DIP (DOE-UCLA)Q969E8
IntAct (EBI)Q969E8
BioGRIDTSR2
STRING (EMBL)TSR2
ZODIACTSR2
Ontologies - Pathways
QuickGOQ969E8
Ontology : AmiGOmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  protein binding  
Ontology : EGO-EBImaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  protein binding  
NDEx NetworkTSR2
Atlas of Cancer Signalling NetworkTSR2
Wikipedia pathwaysTSR2
Orthology - Evolution
OrthoDB90121
GeneTree (enSembl)ENSG00000158526
Phylogenetic Trees/Animal Genes : TreeFamTSR2
Homologs : HomoloGeneTSR2
Homology/Alignments : Family Browser (UCSC)TSR2
Gene fusions - Rearrangements
Fusion : QuiverTSR2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSR2
dbVarTSR2
ClinVarTSR2
MonarchTSR2
1000_GenomesTSR2 
Exome Variant ServerTSR2
GNOMAD BrowserENSG00000158526
Varsome BrowserTSR2
ACMGTSR2 variants
VarityQ969E8
Genomic Variants (DGV)TSR2 [DGVbeta]
DECIPHERTSR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSR2 
Mutations
ICGC Data PortalTSR2 
TCGA Data PortalTSR2 
Broad Tumor PortalTSR2
OASIS PortalTSR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSR2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSR2
Mutations and Diseases : HGMDTSR2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSR2
DgiDB (Drug Gene Interaction Database)TSR2
DoCM (Curated mutations)TSR2
CIViC (Clinical Interpretations of Variants in Cancer)TSR2
Cancer3DTSR2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300945    300946   
Orphanet429   
DisGeNETTSR2
MedgenTSR2
Genetic Testing Registry TSR2
NextProtQ969E8 [Medical]
GENETestsTSR2
Target ValidationTSR2
Huge Navigator TSR2 [HugePedia]
ClinGenTSR2
Clinical trials, drugs, therapy
MyCancerGenomeTSR2
Protein Interactions : CTDTSR2
Pharm GKB GenePA145147877
PharosQ969E8
Clinical trialTSR2
Miscellaneous
canSAR (ICR)TSR2
HarmonizomeTSR2
DataMed IndexTSR2
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:27:12 CEST 2021

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