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TSR2 (TSR2, ribosome maturation factor)

Identity

Alias_namesTSR2, 20S rRNA accumulation, homolog (S. cerevisiae)
Alias_symbol (synonym)DT1P1A10
RP1-112K5.2
WGG1
Other aliasDBA14
HGNC (Hugo) TSR2
LocusID (NCBI) 90121
Atlas_Id 75256
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 54440375 and ends at 54448027 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
STARD13 (13q13.1) / TSR2 (Xp11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSR2   25455
Cards
Entrez_Gene (NCBI)TSR2  90121  TSR2, ribosome maturation factor
AliasesDBA14; DT1P1A10; WGG1
GeneCards (Weizmann)TSR2
Ensembl hg19 (Hinxton)ENSG00000158526 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158526 [Gene_View]  chrX:54440375-54448027 [Contig_View]  TSR2 [Vega]
ICGC DataPortalENSG00000158526
TCGA cBioPortalTSR2
AceView (NCBI)TSR2
Genatlas (Paris)TSR2
WikiGenes90121
SOURCE (Princeton)TSR2
Genetics Home Reference (NIH)TSR2
Genomic and cartography
GoldenPath hg38 (UCSC)TSR2  -     chrX:54440375-54448027 +  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSR2  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblTSR2 - Xp11.22 [CytoView hg19]  TSR2 - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBITSR2 [Mapview hg19]  TSR2 [Mapview hg38]
OMIM300945   300946   
Gene and transcription
Genbank (Entrez)AA251347 BC007699 BC011825 BI488794 HQ448705
RefSeq transcript (Entrez)NM_001346789 NM_001346790 NM_001346791 NM_001346792 NM_058163
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSR2
Cluster EST : UnigeneHs.658392 [ NCBI ]
CGAP (NCI)Hs.658392
Alternative Splicing GalleryENSG00000158526
Gene ExpressionTSR2 [ NCBI-GEO ]   TSR2 [ EBI - ARRAY_EXPRESS ]   TSR2 [ SEEK ]   TSR2 [ MEM ]
Gene Expression Viewer (FireBrowse)TSR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90121
GTEX Portal (Tissue expression)TSR2
Human Protein AtlasENSG00000158526-TSR2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969E8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969E8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969E8
Splice isoforms : SwissVarQ969E8
PhosPhoSitePlusQ969E8
Domains : Interpro (EBI)Pre-rRNA_process_TSR2   
Domain families : Pfam (Sanger)WGG (PF10273)   
Domain families : Pfam (NCBI)pfam10273   
Conserved Domain (NCBI)TSR2
DMDM Disease mutations90121
Blocks (Seattle)TSR2
SuperfamilyQ969E8
Human Protein Atlas [tissue]ENSG00000158526-TSR2 [tissue]
Peptide AtlasQ969E8
HPRD06493
IPIIPI00056314   
Protein Interaction databases
DIP (DOE-UCLA)Q969E8
IntAct (EBI)Q969E8
FunCoupENSG00000158526
BioGRIDTSR2
STRING (EMBL)TSR2
ZODIACTSR2
Ontologies - Pathways
QuickGOQ969E8
Ontology : AmiGOmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  protein binding  nucleus  
Ontology : EGO-EBImaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  protein binding  nucleus  
NDEx NetworkTSR2
Atlas of Cancer Signalling NetworkTSR2
Wikipedia pathwaysTSR2
Orthology - Evolution
OrthoDB90121
GeneTree (enSembl)ENSG00000158526
Phylogenetic Trees/Animal Genes : TreeFamTSR2
HOVERGENQ969E8
HOGENOMQ969E8
Homologs : HomoloGeneTSR2
Homology/Alignments : Family Browser (UCSC)TSR2
Gene fusions - Rearrangements
Tumor Fusion PortalTSR2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSR2
dbVarTSR2
ClinVarTSR2
1000_GenomesTSR2 
Exome Variant ServerTSR2
ExAC (Exome Aggregation Consortium)ENSG00000158526
GNOMAD BrowserENSG00000158526
Genetic variants : HAPMAP90121
Genomic Variants (DGV)TSR2 [DGVbeta]
DECIPHERTSR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSR2 
Mutations
ICGC Data PortalTSR2 
TCGA Data PortalTSR2 
Broad Tumor PortalTSR2
OASIS PortalTSR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSR2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSR2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSR2
DgiDB (Drug Gene Interaction Database)TSR2
DoCM (Curated mutations)TSR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSR2 (select a term)
intoGenTSR2
Cancer3DTSR2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300945    300946   
Orphanet429   
DisGeNETTSR2
MedgenTSR2
Genetic Testing Registry TSR2
NextProtQ969E8 [Medical]
TSGene90121
GENETestsTSR2
Target ValidationTSR2
Huge Navigator TSR2 [HugePedia]
snp3D : Map Gene to Disease90121
BioCentury BCIQTSR2
ClinGenTSR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90121
Chemical/Pharm GKB GenePA145147877
Clinical trialTSR2
Miscellaneous
canSAR (ICR)TSR2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSR2
EVEXTSR2
GoPubMedTSR2
iHOPTSR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:00:50 CET 2017

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