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TSR3 (TSR3, 20S rRNA accumulation, homolog (S. cerevisiae))

Identity

Alias_namesC16orf42
chromosome 16 open reading frame 42
TSR3, 20S rRNA accumulation, homolog (S. cerevisiae)
Alias_symbol (synonym)MGC24381
Other alias
HGNC (Hugo) TSR3
LocusID (NCBI) 115939
Atlas_Id 75257
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1399241 and ends at 1401873 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TSR3 (16p13.3) / UBE2I (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSR3   14175
Cards
Entrez_Gene (NCBI)TSR3  115939  TSR3, 20S rRNA accumulation, homolog (S. cerevisiae)
AliasesC16orf42
GeneCards (Weizmann)TSR3
Ensembl hg19 (Hinxton)ENSG00000007520 [Gene_View]  chr16:1399241-1401873 [Contig_View]  TSR3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000007520 [Gene_View]  chr16:1399241-1401873 [Contig_View]  TSR3 [Vega]
ICGC DataPortalENSG00000007520
TCGA cBioPortalTSR3
AceView (NCBI)TSR3
Genatlas (Paris)TSR3
WikiGenes115939
SOURCE (Princeton)TSR3
Genetics Home Reference (NIH)TSR3
Genomic and cartography
GoldenPath hg19 (UCSC)TSR3  -     chr16:1399241-1401873 -  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TSR3  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblTSR3 - 16p13.3 [CytoView hg19]  TSR3 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBITSR3 [Mapview hg19]  TSR3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC011785 BC013943 BC016699 BC017325
RefSeq transcript (Entrez)NM_001001410
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_016985 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)TSR3
Cluster EST : UnigeneHs.134846 [ NCBI ]
CGAP (NCI)Hs.134846
Alternative Splicing GalleryENSG00000007520
Gene ExpressionTSR3 [ NCBI-GEO ]   TSR3 [ EBI - ARRAY_EXPRESS ]   TSR3 [ SEEK ]   TSR3 [ MEM ]
Gene Expression Viewer (FireBrowse)TSR3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115939
GTEX Portal (Tissue expression)TSR3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJK0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJK0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJK0
Splice isoforms : SwissVarQ9UJK0
PhosPhoSitePlusQ9UJK0
Domains : Interpro (EBI)DUF367    Rbsm_biogenesis    RNaseL-inhib_metal-bd_dom   
Domain families : Pfam (Sanger)DUF367 (PF04034)    RLI (PF04068)   
Domain families : Pfam (NCBI)pfam04034    pfam04068   
Domain structure : Prodom (Prabi Lyon)DUF367 (PD016638)   
Conserved Domain (NCBI)TSR3
DMDM Disease mutations115939
Blocks (Seattle)TSR3
SuperfamilyQ9UJK0
Human Protein AtlasENSG00000007520
Peptide AtlasQ9UJK0
HPRD14496
IPIIPI00011693   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJK0
IntAct (EBI)Q9UJK0
FunCoupENSG00000007520
BioGRIDTSR3
STRING (EMBL)TSR3
ZODIACTSR3
Ontologies - Pathways
QuickGOQ9UJK0
Ontology : AmiGOmaturation of SSU-rRNA  
Ontology : EGO-EBImaturation of SSU-rRNA  
NDEx NetworkTSR3
Atlas of Cancer Signalling NetworkTSR3
Wikipedia pathwaysTSR3
Orthology - Evolution
OrthoDB115939
GeneTree (enSembl)ENSG00000007520
Phylogenetic Trees/Animal Genes : TreeFamTSR3
HOVERGENQ9UJK0
HOGENOMQ9UJK0
Homologs : HomoloGeneTSR3
Homology/Alignments : Family Browser (UCSC)TSR3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSR3
dbVarTSR3
ClinVarTSR3
1000_GenomesTSR3 
Exome Variant ServerTSR3
ExAC (Exome Aggregation Consortium)TSR3 (select the gene name)
Genetic variants : HAPMAP115939
Genomic Variants (DGV)TSR3 [DGVbeta]
DECIPHER (Syndromes)16:1399241-1401873  ENSG00000007520
CONAN: Copy Number AnalysisTSR3 
Mutations
ICGC Data PortalTSR3 
TCGA Data PortalTSR3 
Broad Tumor PortalTSR3
OASIS PortalTSR3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTSR3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSR3
DgiDB (Drug Gene Interaction Database)TSR3
DoCM (Curated mutations)TSR3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSR3 (select a term)
intoGenTSR3
Cancer3DTSR3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTSR3
Genetic Testing Registry TSR3
NextProtQ9UJK0 [Medical]
TSGene115939
GENETestsTSR3
Huge Navigator TSR3 [HugePedia]
snp3D : Map Gene to Disease115939
BioCentury BCIQTSR3
ClinGenTSR3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115939
Chemical/Pharm GKB GenePA25558
Clinical trialTSR3
Miscellaneous
canSAR (ICR)TSR3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSR3
EVEXTSR3
GoPubMedTSR3
iHOPTSR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:03 CET 2017

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