Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TSR3 (TSR3 ribosome maturation factor)

Identity

Alias (NCBI)C16orf42
HsTsr3
HGNC (Hugo) TSR3
HGNC Alias symbMGC24381
HGNC Previous nameC16orf42
HGNC Previous namechromosome 16 open reading frame 42
 TSR3, 20S rRNA accumulation, homolog (S. cerevisiae)
LocusID (NCBI) 115939
Atlas_Id 75257
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1349240 and ends at 1351878 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TSR3 (16p13.3) / UBE2I (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSR3   14175
Cards
Entrez_Gene (NCBI)TSR3    TSR3 ribosome maturation factor
AliasesC16orf42; HsTsr3
GeneCards (Weizmann)TSR3
Ensembl hg19 (Hinxton)ENSG00000007520 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000007520 [Gene_View]  ENSG00000007520 [Sequence]  chr16:1349240-1351878 [Contig_View]  TSR3 [Vega]
ICGC DataPortalENSG00000007520
TCGA cBioPortalTSR3
AceView (NCBI)TSR3
Genatlas (Paris)TSR3
SOURCE (Princeton)TSR3
Genetics Home Reference (NIH)TSR3
Genomic and cartography
GoldenPath hg38 (UCSC)TSR3  -     chr16:1349240-1351878 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSR3  -     16p13.3   [Description]    (hg19-Feb_2009)
GoldenPathTSR3 - 16p13.3 [CytoView hg19]  TSR3 - 16p13.3 [CytoView hg38]
ImmunoBaseENSG00000007520
Genome Data Viewer NCBITSR3 [Mapview hg19]  
OMIM617058   
Gene and transcription
Genbank (Entrez)BC011785 BC013943 BC016699 BC017325
RefSeq transcript (Entrez)NM_001001410
Consensus coding sequences : CCDS (NCBI)TSR3
Gene ExpressionTSR3 [ NCBI-GEO ]   TSR3 [ EBI - ARRAY_EXPRESS ]   TSR3 [ SEEK ]   TSR3 [ MEM ]
Gene Expression Viewer (FireBrowse)TSR3 [ Firebrowse - Broad ]
GenevisibleExpression of TSR3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115939
GTEX Portal (Tissue expression)TSR3
Human Protein AtlasENSG00000007520-TSR3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJK0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJK0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJK0
PhosPhoSitePlusQ9UJK0
Domains : Interpro (EBI)RNaseL-inhib_metal-bd_dom    Tsr3-like    Tsr3_C   
Domain families : Pfam (Sanger)Ribo_biogen_C (PF04034)    RLI (PF04068)   
Domain families : Pfam (NCBI)pfam04034    pfam04068   
Conserved Domain (NCBI)TSR3
SuperfamilyQ9UJK0
AlphaFold pdb e-kbQ9UJK0   
Human Protein Atlas [tissue]ENSG00000007520-TSR3 [tissue]
HPRD14496
Protein Interaction databases
DIP (DOE-UCLA)Q9UJK0
IntAct (EBI)Q9UJK0
BioGRIDTSR3
STRING (EMBL)TSR3
ZODIACTSR3
Ontologies - Pathways
QuickGOQ9UJK0
Ontology : AmiGOrRNA modification  enzyme-directed rRNA pseudouridine synthesis  cytosol  transferase activity  transferase activity  maturation of SSU-rRNA  S-adenosyl-L-methionine binding  
Ontology : EGO-EBIrRNA modification  enzyme-directed rRNA pseudouridine synthesis  cytosol  transferase activity  transferase activity  maturation of SSU-rRNA  S-adenosyl-L-methionine binding  
NDEx NetworkTSR3
Atlas of Cancer Signalling NetworkTSR3
Wikipedia pathwaysTSR3
Orthology - Evolution
OrthoDB115939
GeneTree (enSembl)ENSG00000007520
Phylogenetic Trees/Animal Genes : TreeFamTSR3
Homologs : HomoloGeneTSR3
Homology/Alignments : Family Browser (UCSC)TSR3
Gene fusions - Rearrangements
Fusion : QuiverTSR3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSR3
dbVarTSR3
ClinVarTSR3
MonarchTSR3
1000_GenomesTSR3 
Exome Variant ServerTSR3
GNOMAD BrowserENSG00000007520
Varsome BrowserTSR3
ACMGTSR3 variants
VarityQ9UJK0
Genomic Variants (DGV)TSR3 [DGVbeta]
DECIPHERTSR3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSR3 
Mutations
ICGC Data PortalTSR3 
TCGA Data PortalTSR3 
Broad Tumor PortalTSR3
OASIS PortalTSR3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSR3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSR3
Mutations and Diseases : HGMDTSR3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSR3
DgiDB (Drug Gene Interaction Database)TSR3
DoCM (Curated mutations)TSR3
CIViC (Clinical Interpretations of Variants in Cancer)TSR3
Cancer3DTSR3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617058   
Orphanet
DisGeNETTSR3
MedgenTSR3
Genetic Testing Registry TSR3
NextProtQ9UJK0 [Medical]
GENETestsTSR3
Target ValidationTSR3
Huge Navigator TSR3 [HugePedia]
ClinGenTSR3
Clinical trials, drugs, therapy
MyCancerGenomeTSR3
Protein Interactions : CTDTSR3
Pharm GKB GenePA25558
PharosQ9UJK0
Clinical trialTSR3
Miscellaneous
canSAR (ICR)TSR3
HarmonizomeTSR3
DataMed IndexTSR3
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:27:13 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.