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TSSC1 (tumor suppressing subtransferable candidate 1)

Identity

Other names-
HGNC (Hugo) TSSC1
LocusID (NCBI) 7260
Atlas_Id 42719
Location 2p25.3
Location_base_pair Starts at 3192741 and ends at 3381653 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TSSC1 (2p25.3) / TSPAN7 (Xp11.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSSC1   12383
Cards
Entrez_Gene (NCBI)TSSC1  7260  tumor suppressing subtransferable candidate 1
Aliases
GeneCards (Weizmann)TSSC1
Ensembl hg19 (Hinxton)ENSG00000032389 [Gene_View]  chr2:3192741-3381653 [Contig_View]  TSSC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000032389 [Gene_View]  chr2:3192741-3381653 [Contig_View]  TSSC1 [Vega]
ICGC DataPortalENSG00000032389
TCGA cBioPortalTSSC1
AceView (NCBI)TSSC1
Genatlas (Paris)TSSC1
WikiGenes7260
SOURCE (Princeton)TSSC1
Genomic and cartography
GoldenPath hg19 (UCSC)TSSC1  -     chr2:3192741-3381653 -  2p25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TSSC1  -     2p25.3   [Description]    (hg38-Dec_2013)
EnsemblTSSC1 - 2p25.3 [CytoView hg19]  TSSC1 - 2p25.3 [CytoView hg38]
Mapping of homologs : NCBITSSC1 [Mapview hg19]  TSSC1 [Mapview hg38]
OMIM608998   
Gene and transcription
Genbank (Entrez)AF019952 AK026522 AK126288 AK222652 BC002485
RefSeq transcript (Entrez)NM_003310
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005334 NW_004929296
Consensus coding sequences : CCDS (NCBI)TSSC1
Cluster EST : UnigeneHs.502770 [ NCBI ]
CGAP (NCI)Hs.502770
Alternative Splicing GalleryENSG00000032389
Gene ExpressionTSSC1 [ NCBI-GEO ]   TSSC1 [ EBI - ARRAY_EXPRESS ]   TSSC1 [ SEEK ]   TSSC1 [ MEM ]
Gene Expression Viewer (FireBrowse)TSSC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7260
GTEX Portal (Tissue expression)TSSC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53HC9 (Uniprot)
NextProtQ53HC9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53HC9
Splice isoforms : SwissVarQ53HC9 (Swissvar)
PhosPhoSitePlusQ53HC9
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
DMDM Disease mutations7260
Blocks (Seattle)TSSC1
SuperfamilyQ53HC9
Human Protein AtlasENSG00000032389
Peptide AtlasQ53HC9
HPRD10287
IPIIPI00019550   IPI00893829   IPI00893954   IPI00893550   IPI00893676   IPI00894326   IPI00894442   IPI00894302   
Protein Interaction databases
DIP (DOE-UCLA)Q53HC9
IntAct (EBI)Q53HC9
FunCoupENSG00000032389
BioGRIDTSSC1
STRING (EMBL)TSSC1
ZODIACTSSC1
Ontologies - Pathways
QuickGOQ53HC9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx Network
Atlas of Cancer Signalling NetworkTSSC1
Wikipedia pathwaysTSSC1
Orthology - Evolution
OrthoDB7260
GeneTree (enSembl)ENSG00000032389
Phylogenetic Trees/Animal Genes : TreeFamTSSC1
Homologs : HomoloGeneTSSC1
Homology/Alignments : Family Browser (UCSC)TSSC1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerTSSC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSSC1
dbVarTSSC1
ClinVarTSSC1
1000_GenomesTSSC1 
Exome Variant ServerTSSC1
ExAC (Exome Aggregation Consortium)TSSC1 (select the gene name)
Genetic variants : HAPMAP7260
Genomic Variants (DGV)TSSC1 [DGVbeta]
Mutations
ICGC Data PortalTSSC1 
TCGA Data PortalTSSC1 
Broad Tumor PortalTSSC1
OASIS PortalTSSC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSSC1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSSC1
DgiDB (Drug Gene Interaction Database)TSSC1
DoCM (Curated mutations)TSSC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSSC1 (select a term)
intoGenTSSC1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)2:3192741-3381653  ENSG00000032389
CONAN: Copy Number AnalysisTSSC1 
Mutations and Diseases : HGMDTSSC1
OMIM608998   
MedgenTSSC1
Genetic Testing Registry TSSC1
NextProtQ53HC9 [Medical]
TSGene7260
GENETestsTSSC1
Huge Navigator TSSC1 [HugePedia]
snp3D : Map Gene to Disease7260
BioCentury BCIQTSSC1
ClinGenTSSC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7260
Chemical/Pharm GKB GenePA37051
Clinical trialTSSC1
Miscellaneous
canSAR (ICR)TSSC1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSSC1
EVEXTSSC1
GoPubMedTSSC1
iHOPTSSC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 11:25:54 CEST 2016

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