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TSSC1 (tumor suppressing subtransferable candidate 1)

Identity

Other names-
HGNC (Hugo) TSSC1
LocusID (NCBI) 7260
Location 2p25.3
Location_base_pair Starts at 3192741 and ends at 3381653 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TSSC1   12383
Cards
Entrez_Gene (NCBI)TSSC1  7260  tumor suppressing subtransferable candidate 1
GeneCards (Weizmann)TSSC1
Ensembl (Hinxton)ENSG00000032389 [Gene_View]  chr2:3192741-3381653 [Contig_View]  TSSC1 [Vega]
ICGC DataPortalENSG00000032389
AceView (NCBI)TSSC1
Genatlas (Paris)TSSC1
WikiGenes7260
SOURCE (Princeton)NM_003310
Genomic and cartography
GoldenPath (UCSC)TSSC1  -  2p25.3   chr2:3192741-3381653 -  2p25.3   [Description]    (hg19-Feb_2009)
EnsemblTSSC1 - 2p25.3 [CytoView]
Mapping of homologs : NCBITSSC1 [Mapview]
OMIM608998   
Gene and transcription
Genbank (Entrez)AF019952 AK026522 AK126288 AK222652 BC002485
RefSeq transcript (Entrez)NM_003310
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NT_005334 NW_001838763 NW_004929296
Consensus coding sequences : CCDS (NCBI)TSSC1
Cluster EST : UnigeneHs.502770 [ NCBI ]
CGAP (NCI)Hs.502770
Alternative Splicing : Fast-db (Paris)GSHG0017390
Alternative Splicing GalleryENSG00000032389
Gene ExpressionTSSC1 [ NCBI-GEO ]     TSSC1 [ SEEK ]   TSSC1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53HC9 (Uniprot)
NextProtQ53HC9  [Medical]
With graphics : InterProQ53HC9
Splice isoforms : SwissVarQ53HC9 (Swissvar)
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Related proteins : CluSTrQ53HC9
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
DMDM Disease mutations7260
Blocks (Seattle)Q53HC9
Human Protein AtlasENSG00000032389
Peptide AtlasQ53HC9
HPRD10287
IPIIPI00019550   IPI00893829   IPI00893954   IPI00893550   IPI00893676   IPI00894326   IPI00894442   IPI00894302   
Protein Interaction databases
DIP (DOE-UCLA)Q53HC9
IntAct (EBI)Q53HC9
FunCoupENSG00000032389
BioGRIDTSSC1
IntegromeDBTSSC1
STRING (EMBL)TSSC1
Ontologies - Pathways
QuickGOQ53HC9
Ontology : AmiGO
Ontology : EGO-EBI
Protein Interaction DatabaseTSSC1
Wikipedia pathwaysTSSC1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TSSC1
SNP (GeneSNP Utah)TSSC1
SNP : HGBaseTSSC1
Genetic variants : HAPMAPTSSC1
1000_GenomesTSSC1 
ICGC programENSG00000032389 
CONAN: Copy Number AnalysisTSSC1 
Somatic Mutations in Cancer : COSMICTSSC1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
DECIPHER (Syndromes)2:3192741-3381653
Mutations and Diseases : HGMDTSSC1
OMIM608998   
MedgenTSSC1
GENETestsTSSC1
Disease Genetic AssociationTSSC1
Huge Navigator TSSC1 [HugePedia]  TSSC1 [HugeCancerGEM]
Genomic VariantsTSSC1  TSSC1 [DGVbeta]
Exome VariantTSSC1
dbVarTSSC1
ClinVarTSSC1
snp3D : Map Gene to Disease7260
General knowledge
Homologs : HomoloGeneTSSC1
Homology/Alignments : Family Browser (UCSC)TSSC1
Phylogenetic Trees/Animal Genes : TreeFamTSSC1
Chemical/Protein Interactions : CTD7260
Chemical/Pharm GKB GenePA37051
Clinical trialTSSC1
Cancer Resource (Charite)ENSG00000032389
Other databases
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
CoreMineTSSC1
GoPubMedTSSC1
iHOPTSSC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 18:03:39 CET 2014

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