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TSSC2 (tumor suppressing subtransferable candidate 2 (pseudogene))

Identity

Alias (NCBI)-
HGNC (Hugo) TSSC2
HGNC Alias nametumor-supressing STF cDNA 2
 asparagine-linked glycosylation 1 homolog (yeast, beta-1,4-mannosyltransferase) (ALG1) pseudogene
HGNC Previous nametumor suppressing subtransferable candidate 2
 tumor suppressing subtransferable candidate 2 pseudogene
LocusID (NCBI) 650368
Atlas_Id 42720
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 3380961 and ends at 3409148 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)TSSC2   12384
Cards
Entrez_Gene (NCBI)TSSC2    tumor suppressing subtransferable candidate 2 (pseudogene)
Aliases
GeneCards (Weizmann)TSSC2
Ensembl hg19 (Hinxton)ENSG00000223756 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000223756 [Gene_View]  ENSG00000223756 [Sequence]  chr11:3380961-3409148 [Contig_View]  TSSC2 [Vega]
ICGC DataPortalENSG00000223756
TCGA cBioPortalTSSC2
AceView (NCBI)TSSC2
Genatlas (Paris)TSSC2
SOURCE (Princeton)TSSC2
Genetics Home Reference (NIH)TSSC2
Genomic and cartography
GoldenPath hg38 (UCSC)TSSC2  -     chr11:3380961-3409148 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSSC2  -     11p15.4   [Description]    (hg19-Feb_2009)
GoldenPathTSSC2 - 11p15.4 [CytoView hg19]  TSSC2 - 11p15.4 [CytoView hg38]
ImmunoBaseENSG00000223756
Genome Data Viewer NCBITSSC2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK123648 AL528594 CN418596 DB226687
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)TSSC2
Gene ExpressionTSSC2 [ NCBI-GEO ]   TSSC2 [ EBI - ARRAY_EXPRESS ]   TSSC2 [ SEEK ]   TSSC2 [ MEM ]
Gene Expression Viewer (FireBrowse)TSSC2 [ Firebrowse - Broad ]
GenevisibleExpression of TSSC2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)650368
GTEX Portal (Tissue expression)TSSC2
Human Protein AtlasENSG00000223756-TSSC2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TSSC2
Human Protein Atlas [tissue]ENSG00000223756-TSSC2 [tissue]
Protein Interaction databases
BioGRIDTSSC2
STRING (EMBL)TSSC2
ZODIACTSSC2
Ontologies - Pathways
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSSC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:36:41 CEST 2021

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