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TSSC4 (tumor suppressing subtransferable candidate 4)

Identity

Other alias-
HGNC (Hugo) TSSC4
LocusID (NCBI) 10078
Atlas_Id 42721
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 2400488 and ends at 2403878 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSSC4   12386
Cards
Entrez_Gene (NCBI)TSSC4  10078  tumor suppressing subtransferable candidate 4
Aliases
GeneCards (Weizmann)TSSC4
Ensembl hg19 (Hinxton)ENSG00000184281 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184281 [Gene_View]  chr11:2400488-2403878 [Contig_View]  TSSC4 [Vega]
ICGC DataPortalENSG00000184281
TCGA cBioPortalTSSC4
AceView (NCBI)TSSC4
Genatlas (Paris)TSSC4
WikiGenes10078
SOURCE (Princeton)TSSC4
Genetics Home Reference (NIH)TSSC4
Genomic and cartography
GoldenPath hg38 (UCSC)TSSC4  -     chr11:2400488-2403878 +  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSSC4  -     11p15.5   [Description]    (hg19-Feb_2009)
EnsemblTSSC4 - 11p15.5 [CytoView hg19]  TSSC4 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBITSSC4 [Mapview hg19]  TSSC4 [Mapview hg38]
OMIM603852   
Gene and transcription
Genbank (Entrez)AF125568 AI627557 BC006091 BC050616 BI084274
RefSeq transcript (Entrez)NM_001297658 NM_001297659 NM_001297660 NM_001297661 NM_005706
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSSC4
Cluster EST : UnigeneHs.732116 [ NCBI ]
CGAP (NCI)Hs.732116
Alternative Splicing GalleryENSG00000184281
Gene ExpressionTSSC4 [ NCBI-GEO ]   TSSC4 [ EBI - ARRAY_EXPRESS ]   TSSC4 [ SEEK ]   TSSC4 [ MEM ]
Gene Expression Viewer (FireBrowse)TSSC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10078
GTEX Portal (Tissue expression)TSSC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5U2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5U2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5U2
Splice isoforms : SwissVarQ9Y5U2
PhosPhoSitePlusQ9Y5U2
Domains : Interpro (EBI)TSSC4   
Domain families : Pfam (Sanger)TSSC4 (PF15264)   
Domain families : Pfam (NCBI)pfam15264   
Conserved Domain (NCBI)TSSC4
DMDM Disease mutations10078
Blocks (Seattle)TSSC4
SuperfamilyQ9Y5U2
Human Protein AtlasENSG00000184281
Peptide AtlasQ9Y5U2
HPRD10357
IPIIPI00305144   IPI00657787   IPI00657638   IPI00657686   IPI00657851   IPI00657886   IPI01009957   IPI01009465   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5U2
IntAct (EBI)Q9Y5U2
FunCoupENSG00000184281
BioGRIDTSSC4
STRING (EMBL)TSSC4
ZODIACTSSC4
Ontologies - Pathways
QuickGOQ9Y5U2
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkTSSC4
Atlas of Cancer Signalling NetworkTSSC4
Wikipedia pathwaysTSSC4
Orthology - Evolution
OrthoDB10078
GeneTree (enSembl)ENSG00000184281
Phylogenetic Trees/Animal Genes : TreeFamTSSC4
HOVERGENQ9Y5U2
HOGENOMQ9Y5U2
Homologs : HomoloGeneTSSC4
Homology/Alignments : Family Browser (UCSC)TSSC4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSSC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSSC4
dbVarTSSC4
ClinVarTSSC4
1000_GenomesTSSC4 
Exome Variant ServerTSSC4
ExAC (Exome Aggregation Consortium)TSSC4 (select the gene name)
Genetic variants : HAPMAP10078
Genomic Variants (DGV)TSSC4 [DGVbeta]
DECIPHERTSSC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSSC4 
Mutations
ICGC Data PortalTSSC4 
TCGA Data PortalTSSC4 
Broad Tumor PortalTSSC4
OASIS PortalTSSC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSSC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSSC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSSC4
DgiDB (Drug Gene Interaction Database)TSSC4
DoCM (Curated mutations)TSSC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSSC4 (select a term)
intoGenTSSC4
Cancer3DTSSC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603852   
Orphanet
MedgenTSSC4
Genetic Testing Registry TSSC4
NextProtQ9Y5U2 [Medical]
TSGene10078
GENETestsTSSC4
Huge Navigator TSSC4 [HugePedia]
snp3D : Map Gene to Disease10078
BioCentury BCIQTSSC4
ClinGenTSSC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10078
Chemical/Pharm GKB GenePA37054
Clinical trialTSSC4
Miscellaneous
canSAR (ICR)TSSC4 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSSC4
EVEXTSSC4
GoPubMedTSSC4
iHOPTSSC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:42:35 CEST 2017

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