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TSSK1B (testis specific serine kinase 1B)

Identity

Alias_namesSTK22D
TSSK1
serine/threonine kinase 22D (spermiogenesis associated)
testis-specific serine kinase 1
Alias_symbol (synonym)SPOGA4
FKSG81
Other aliasTSK1
HGNC (Hugo) TSSK1B
LocusID (NCBI) 83942
Atlas_Id 75259
Location 5q22.2  [Link to chromosome band 5q22]
Location_base_pair Starts at 113432554 and ends at 113435031 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSSK1B   14968
Cards
Entrez_Gene (NCBI)TSSK1B  83942  testis specific serine kinase 1B
AliasesFKSG81; SPOGA4; STK22D; TSK1; 
TSSK1
GeneCards (Weizmann)TSSK1B
Ensembl hg19 (Hinxton)ENSG00000212122 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000212122 [Gene_View]  chr5:113432554-113435031 [Contig_View]  TSSK1B [Vega]
ICGC DataPortalENSG00000212122
TCGA cBioPortalTSSK1B
AceView (NCBI)TSSK1B
Genatlas (Paris)TSSK1B
WikiGenes83942
SOURCE (Princeton)TSSK1B
Genetics Home Reference (NIH)TSSK1B
Genomic and cartography
GoldenPath hg38 (UCSC)TSSK1B  -     chr5:113432554-113435031 -  5q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSSK1B  -     5q22.2   [Description]    (hg19-Feb_2009)
EnsemblTSSK1B - 5q22.2 [CytoView hg19]  TSSK1B - 5q22.2 [CytoView hg38]
Mapping of homologs : NCBITSSK1B [Mapview hg19]  TSSK1B [Mapview hg38]
OMIM610709   
Gene and transcription
Genbank (Entrez)AF348076 AK122904 AK313332 AY028964 BC022515
RefSeq transcript (Entrez)NM_032028
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSSK1B
Cluster EST : UnigeneHs.519507 [ NCBI ]
CGAP (NCI)Hs.519507
Alternative Splicing GalleryENSG00000212122
Gene ExpressionTSSK1B [ NCBI-GEO ]   TSSK1B [ EBI - ARRAY_EXPRESS ]   TSSK1B [ SEEK ]   TSSK1B [ MEM ]
Gene Expression Viewer (FireBrowse)TSSK1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83942
GTEX Portal (Tissue expression)TSSK1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXA7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXA7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXA7
Splice isoforms : SwissVarQ9BXA7
Catalytic activity : Enzyme2.7.11.1 [ Enzyme-Expasy ]   2.7.11.12.7.11.1 [ IntEnz-EBI ]   2.7.11.1 [ BRENDA ]   2.7.11.1 [ KEGG ]   
PhosPhoSitePlusQ9BXA7
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)Kinase-like_dom    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_kinase_AS   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
Conserved Domain (NCBI)TSSK1B
DMDM Disease mutations83942
Blocks (Seattle)TSSK1B
SuperfamilyQ9BXA7
Human Protein AtlasENSG00000212122
Peptide AtlasQ9BXA7
HPRD11610
IPIIPI00012465   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXA7
IntAct (EBI)Q9BXA7
FunCoupENSG00000212122
BioGRIDTSSK1B
STRING (EMBL)TSSK1B
ZODIACTSSK1B
Ontologies - Pathways
QuickGOQ9BXA7
Ontology : AmiGOmagnesium ion binding  acrosomal vesicle  protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  cytoplasm  protein phosphorylation  multicellular organism development  spermatid development  motile cilium  intracellular signal transduction  
Ontology : EGO-EBImagnesium ion binding  acrosomal vesicle  protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  cytoplasm  protein phosphorylation  multicellular organism development  spermatid development  motile cilium  intracellular signal transduction  
NDEx NetworkTSSK1B
Atlas of Cancer Signalling NetworkTSSK1B
Wikipedia pathwaysTSSK1B
Orthology - Evolution
OrthoDB83942
GeneTree (enSembl)ENSG00000212122
Phylogenetic Trees/Animal Genes : TreeFamTSSK1B
HOVERGENQ9BXA7
HOGENOMQ9BXA7
Homologs : HomoloGeneTSSK1B
Homology/Alignments : Family Browser (UCSC)TSSK1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSSK1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSSK1B
dbVarTSSK1B
ClinVarTSSK1B
1000_GenomesTSSK1B 
Exome Variant ServerTSSK1B
ExAC (Exome Aggregation Consortium)TSSK1B (select the gene name)
Genetic variants : HAPMAP83942
Genomic Variants (DGV)TSSK1B [DGVbeta]
DECIPHERTSSK1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSSK1B 
Mutations
ICGC Data PortalTSSK1B 
TCGA Data PortalTSSK1B 
Broad Tumor PortalTSSK1B
OASIS PortalTSSK1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSSK1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSSK1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSSK1B
DgiDB (Drug Gene Interaction Database)TSSK1B
DoCM (Curated mutations)TSSK1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSSK1B (select a term)
intoGenTSSK1B
Cancer3DTSSK1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610709   
Orphanet
MedgenTSSK1B
Genetic Testing Registry TSSK1B
NextProtQ9BXA7 [Medical]
TSGene83942
GENETestsTSSK1B
Target ValidationTSSK1B
Huge Navigator TSSK1B [HugePedia]
snp3D : Map Gene to Disease83942
BioCentury BCIQTSSK1B
ClinGenTSSK1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83942
Chemical/Pharm GKB GenePA37944
Clinical trialTSSK1B
Miscellaneous
canSAR (ICR)TSSK1B (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSSK1B
EVEXTSSK1B
GoPubMedTSSK1B
iHOPTSSK1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:46 CEST 2017

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