Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TSSK3 (testis specific serine kinase 3)

Identity

Alias (NCBI)SPOGA3
STK22C
STK22D
TSK3
HGNC (Hugo) TSSK3
HGNC Alias symbSPOGA3
HGNC Previous nameSTK22C
HGNC Previous nameserine/threonine kinase 22C (spermiogenesis associated)
LocusID (NCBI) 81629
Atlas_Id 75261
Location 1p35.1  [Link to chromosome band 1p35]
Location_base_pair Starts at 32362539 and ends at 32364309 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ENY2 (8q23.1) / TSSK3 (1p35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TSSK3   15473
Cards
Entrez_Gene (NCBI)TSSK3    testis specific serine kinase 3
AliasesSPOGA3; STK22C; STK22D; TSK3
GeneCards (Weizmann)TSSK3
Ensembl hg19 (Hinxton)ENSG00000162526 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162526 [Gene_View]  ENSG00000162526 [Sequence]  chr1:32362539-32364309 [Contig_View]  TSSK3 [Vega]
ICGC DataPortalENSG00000162526
TCGA cBioPortalTSSK3
AceView (NCBI)TSSK3
Genatlas (Paris)TSSK3
SOURCE (Princeton)TSSK3
Genetics Home Reference (NIH)TSSK3
Genomic and cartography
GoldenPath hg38 (UCSC)TSSK3  -     chr1:32362539-32364309 +  1p35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSSK3  -     1p35.1   [Description]    (hg19-Feb_2009)
GoldenPathTSSK3 - 1p35.1 [CytoView hg19]  TSSK3 - 1p35.1 [CytoView hg38]
ImmunoBaseENSG00000162526
Genome Data Viewer NCBITSSK3 [Mapview hg19]  
OMIM607660   
Gene and transcription
Genbank (Entrez)AF296450 AY048701 BC035354 BF509953
RefSeq transcript (Entrez)NM_052841
Consensus coding sequences : CCDS (NCBI)TSSK3
Gene ExpressionTSSK3 [ NCBI-GEO ]   TSSK3 [ EBI - ARRAY_EXPRESS ]   TSSK3 [ SEEK ]   TSSK3 [ MEM ]
Gene Expression Viewer (FireBrowse)TSSK3 [ Firebrowse - Broad ]
GenevisibleExpression of TSSK3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81629
GTEX Portal (Tissue expression)TSSK3
Human Protein AtlasENSG00000162526-TSSK3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PN8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PN8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PN8
Catalytic activity : Enzyme2.7.11.1 [ Enzyme-Expasy ]   2.7.11.12.7.11.1 [ IntEnz-EBI ]   2.7.11.1 [ BRENDA ]   2.7.11.1 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ96PN8
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)   
Domains : Interpro (EBI)Kinase-like_dom_sf    Prot_kinase_dom    Protein_kinase_ATP_BS    TSSK3_STKc   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
Conserved Domain (NCBI)TSSK3
SuperfamilyQ96PN8
AlphaFold pdb e-kbQ96PN8   
Human Protein Atlas [tissue]ENSG00000162526-TSSK3 [tissue]
HPRD09635
Protein Interaction databases
DIP (DOE-UCLA)Q96PN8
IntAct (EBI)Q96PN8
BioGRIDTSSK3
STRING (EMBL)TSSK3
ZODIACTSSK3
Ontologies - Pathways
QuickGOQ96PN8
Ontology : AmiGOmagnesium ion binding  protein serine/threonine kinase activity  protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  cytoplasm  protein phosphorylation  protein phosphorylation  multicellular organism development  spermatogenesis  cell differentiation  intracellular signal transduction  protein serine kinase activity  protein threonine kinase activity  
Ontology : EGO-EBImagnesium ion binding  protein serine/threonine kinase activity  protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  cytoplasm  protein phosphorylation  protein phosphorylation  multicellular organism development  spermatogenesis  cell differentiation  intracellular signal transduction  protein serine kinase activity  protein threonine kinase activity  
NDEx NetworkTSSK3
Atlas of Cancer Signalling NetworkTSSK3
Wikipedia pathwaysTSSK3
Orthology - Evolution
OrthoDB81629
GeneTree (enSembl)ENSG00000162526
Phylogenetic Trees/Animal Genes : TreeFamTSSK3
Homologs : HomoloGeneTSSK3
Homology/Alignments : Family Browser (UCSC)TSSK3
Gene fusions - Rearrangements
Fusion : QuiverTSSK3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSSK3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSSK3
dbVarTSSK3
ClinVarTSSK3
MonarchTSSK3
1000_GenomesTSSK3 
Exome Variant ServerTSSK3
GNOMAD BrowserENSG00000162526
Varsome BrowserTSSK3
ACMGTSSK3 variants
VarityQ96PN8
Genomic Variants (DGV)TSSK3 [DGVbeta]
DECIPHERTSSK3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSSK3 
Mutations
ICGC Data PortalTSSK3 
TCGA Data PortalTSSK3 
Broad Tumor PortalTSSK3
OASIS PortalTSSK3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSSK3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSSK3
Mutations and Diseases : HGMDTSSK3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTSSK3
DgiDB (Drug Gene Interaction Database)TSSK3
DoCM (Curated mutations)TSSK3
CIViC (Clinical Interpretations of Variants in Cancer)TSSK3
Cancer3DTSSK3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607660   
Orphanet
DisGeNETTSSK3
MedgenTSSK3
Genetic Testing Registry TSSK3
NextProtQ96PN8 [Medical]
GENETestsTSSK3
Target ValidationTSSK3
Huge Navigator TSSK3 [HugePedia]
ClinGenTSSK3
Clinical trials, drugs, therapy
MyCancerGenomeTSSK3
Protein Interactions : CTDTSSK3
Pharm GKB GenePA37964
PharosQ96PN8
Clinical trialTSSK3
Miscellaneous
canSAR (ICR)TSSK3
HarmonizomeTSSK3
DataMed IndexTSSK3
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTSSK3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:27:13 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.