Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TSSK6 (testis specific serine kinase 6)

Identity

Alias_symbol (synonym)SSTK
FLJ24002
CT72
Other aliasFKSG82
TSSK4
HGNC (Hugo) TSSK6
LocusID (NCBI) 83983
Atlas_Id 75262
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 19514219 and ends at 19515660 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSSK6   30410
Cards
Entrez_Gene (NCBI)TSSK6  83983  testis specific serine kinase 6
AliasesCT72; FKSG82; SSTK; TSSK4
GeneCards (Weizmann)TSSK6
Ensembl hg19 (Hinxton)ENSG00000178093 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178093 [Gene_View]  chr19:19514219-19515660 [Contig_View]  TSSK6 [Vega]
ICGC DataPortalENSG00000178093
TCGA cBioPortalTSSK6
AceView (NCBI)TSSK6
Genatlas (Paris)TSSK6
WikiGenes83983
SOURCE (Princeton)TSSK6
Genetics Home Reference (NIH)TSSK6
Genomic and cartography
GoldenPath hg38 (UCSC)TSSK6  -     chr19:19514219-19515660 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSSK6  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblTSSK6 - 19p13.11 [CytoView hg19]  TSSK6 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBITSSK6 [Mapview hg19]  TSSK6 [Mapview hg38]
OMIM610712   
Gene and transcription
Genbank (Entrez)AA608857 AF329483 AF348077 AK058166 AK172841
RefSeq transcript (Entrez)NM_032037
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSSK6
Cluster EST : UnigeneHs.666780 [ NCBI ]
CGAP (NCI)Hs.666780
Alternative Splicing GalleryENSG00000178093
Gene ExpressionTSSK6 [ NCBI-GEO ]   TSSK6 [ EBI - ARRAY_EXPRESS ]   TSSK6 [ SEEK ]   TSSK6 [ MEM ]
Gene Expression Viewer (FireBrowse)TSSK6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83983
GTEX Portal (Tissue expression)TSSK6
Human Protein AtlasENSG00000178093-TSSK6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXA6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXA6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXA6
Splice isoforms : SwissVarQ9BXA6
Catalytic activity : Enzyme2.7.11.1 [ Enzyme-Expasy ]   2.7.11.12.7.11.1 [ IntEnz-EBI ]   2.7.11.1 [ BRENDA ]   2.7.11.1 [ KEGG ]   
PhosPhoSitePlusQ9BXA6
Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (EBI)Kinase-like_dom    Prot_kinase_dom    Protein_kinase_ATP_BS    Ser/Thr_kinase_AS   
Domain families : Pfam (Sanger)Pkinase (PF00069)   
Domain families : Pfam (NCBI)pfam00069   
Domain families : Smart (EMBL)S_TKc (SM00220)  
Conserved Domain (NCBI)TSSK6
DMDM Disease mutations83983
Blocks (Seattle)TSSK6
SuperfamilyQ9BXA6
Human Protein Atlas [tissue]ENSG00000178093-TSSK6 [tissue]
Peptide AtlasQ9BXA6
HPRD15441
IPIIPI00012485   IPI00982053   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXA6
IntAct (EBI)Q9BXA6
FunCoupENSG00000178093
BioGRIDTSSK6
STRING (EMBL)TSSK6
ZODIACTSSK6
Ontologies - Pathways
QuickGOQ9BXA6
Ontology : AmiGOmagnesium ion binding  protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  cytoplasm  protein phosphorylation  multicellular organism development  sperm chromatin condensation  intracellular signal transduction  
Ontology : EGO-EBImagnesium ion binding  protein serine/threonine kinase activity  protein binding  ATP binding  nucleus  cytoplasm  protein phosphorylation  multicellular organism development  sperm chromatin condensation  intracellular signal transduction  
NDEx NetworkTSSK6
Atlas of Cancer Signalling NetworkTSSK6
Wikipedia pathwaysTSSK6
Orthology - Evolution
OrthoDB83983
GeneTree (enSembl)ENSG00000178093
Phylogenetic Trees/Animal Genes : TreeFamTSSK6
HOVERGENQ9BXA6
HOGENOMQ9BXA6
Homologs : HomoloGeneTSSK6
Homology/Alignments : Family Browser (UCSC)TSSK6
Gene fusions - Rearrangements
Fusion: Tumor Portal TSSK6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSSK6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSSK6
dbVarTSSK6
ClinVarTSSK6
1000_GenomesTSSK6 
Exome Variant ServerTSSK6
ExAC (Exome Aggregation Consortium)ENSG00000178093
GNOMAD BrowserENSG00000178093
Genetic variants : HAPMAP83983
Genomic Variants (DGV)TSSK6 [DGVbeta]
DECIPHERTSSK6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSSK6 
Mutations
ICGC Data PortalTSSK6 
TCGA Data PortalTSSK6 
Broad Tumor PortalTSSK6
OASIS PortalTSSK6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSSK6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSSK6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSSK6
DgiDB (Drug Gene Interaction Database)TSSK6
DoCM (Curated mutations)TSSK6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSSK6 (select a term)
intoGenTSSK6
Cancer3DTSSK6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610712   
Orphanet
MedgenTSSK6
Genetic Testing Registry TSSK6
NextProtQ9BXA6 [Medical]
TSGene83983
GENETestsTSSK6
Target ValidationTSSK6
Huge Navigator TSSK6 [HugePedia]
snp3D : Map Gene to Disease83983
BioCentury BCIQTSSK6
ClinGenTSSK6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83983
Chemical/Pharm GKB GenePA142670682
Clinical trialTSSK6
Miscellaneous
canSAR (ICR)TSSK6 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSSK6
EVEXTSSK6
GoPubMedTSSK6
iHOPTSSK6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:34:19 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.