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TST (thiosulfate sulfurtransferase)

Identity

Alias_namesthiosulfate sulfurtransferase (rhodanese)
Alias_symbol (synonym)RDS
Other alias
HGNC (Hugo) TST
LocusID (NCBI) 7263
Atlas_Id 75263
Location 22q12.3  [Link to chromosome band 22q12]
Location_base_pair Starts at 37010859 and ends at 37020183 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TST   12388
Cards
Entrez_Gene (NCBI)TST  7263  thiosulfate sulfurtransferase
AliasesRDS
GeneCards (Weizmann)TST
Ensembl hg19 (Hinxton)ENSG00000128311 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128311 [Gene_View]  chr22:37010859-37020183 [Contig_View]  TST [Vega]
ICGC DataPortalENSG00000128311
TCGA cBioPortalTST
AceView (NCBI)TST
Genatlas (Paris)TST
WikiGenes7263
SOURCE (Princeton)TST
Genetics Home Reference (NIH)TST
Genomic and cartography
GoldenPath hg38 (UCSC)TST  -     chr22:37010859-37020183 -  22q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TST  -     22q12.3   [Description]    (hg19-Feb_2009)
EnsemblTST - 22q12.3 [CytoView hg19]  TST - 22q12.3 [CytoView hg38]
Mapping of homologs : NCBITST [Mapview hg19]  TST [Mapview hg38]
OMIM180370   
Gene and transcription
Genbank (Entrez)AI869664 AK000862 AK091874 AK223521 AK301300
RefSeq transcript (Entrez)NM_001270483 NM_003312
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TST
Cluster EST : UnigeneHs.474783 [ NCBI ]
CGAP (NCI)Hs.474783
Alternative Splicing GalleryENSG00000128311
Gene ExpressionTST [ NCBI-GEO ]   TST [ EBI - ARRAY_EXPRESS ]   TST [ SEEK ]   TST [ MEM ]
Gene Expression Viewer (FireBrowse)TST [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7263
GTEX Portal (Tissue expression)TST
Human Protein AtlasENSG00000128311-TST [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16762   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16762  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16762
Splice isoforms : SwissVarQ16762
Catalytic activity : Enzyme2.8.1.1 [ Enzyme-Expasy ]   2.8.1.12.8.1.1 [ IntEnz-EBI ]   2.8.1.1 [ BRENDA ]   2.8.1.1 [ KEGG ]   
PhosPhoSitePlusQ16762
Domaine pattern : Prosite (Expaxy)RHODANESE_1 (PS00380)    RHODANESE_2 (PS00683)    RHODANESE_3 (PS50206)   
Domains : Interpro (EBI)Rhodanese-like_dom    Thiosulphate_STrfase_CS   
Domain families : Pfam (Sanger)Rhodanese (PF00581)   
Domain families : Pfam (NCBI)pfam00581   
Domain families : Smart (EMBL)RHOD (SM00450)  
Conserved Domain (NCBI)TST
DMDM Disease mutations7263
Blocks (Seattle)TST
SuperfamilyQ16762
Human Protein Atlas [tissue]ENSG00000128311-TST [tissue]
Peptide AtlasQ16762
HPRD01583
IPIIPI00216293   IPI00878140   
Protein Interaction databases
DIP (DOE-UCLA)Q16762
IntAct (EBI)Q16762
FunCoupENSG00000128311
BioGRIDTST
STRING (EMBL)TST
ZODIACTST
Ontologies - Pathways
QuickGOQ16762
Ontology : AmiGOthiosulfate sulfurtransferase activity  extracellular space  mitochondrion  mitochondrial inner membrane  mitochondrial matrix  5S rRNA binding  cyanate catabolic process  epithelial cell differentiation  rRNA import into mitochondrion  rRNA transport  extracellular exosome  
Ontology : EGO-EBIthiosulfate sulfurtransferase activity  extracellular space  mitochondrion  mitochondrial inner membrane  mitochondrial matrix  5S rRNA binding  cyanate catabolic process  epithelial cell differentiation  rRNA import into mitochondrion  rRNA transport  extracellular exosome  
Pathways : KEGGCysteine and methionine metabolism    Sulfur metabolism    Sulfur relay system   
NDEx NetworkTST
Atlas of Cancer Signalling NetworkTST
Wikipedia pathwaysTST
Orthology - Evolution
OrthoDB7263
GeneTree (enSembl)ENSG00000128311
Phylogenetic Trees/Animal Genes : TreeFamTST
HOVERGENQ16762
HOGENOMQ16762
Homologs : HomoloGeneTST
Homology/Alignments : Family Browser (UCSC)TST
Gene fusions - Rearrangements
Tumor Fusion PortalTST
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTST [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TST
dbVarTST
ClinVarTST
1000_GenomesTST 
Exome Variant ServerTST
ExAC (Exome Aggregation Consortium)ENSG00000128311
GNOMAD BrowserENSG00000128311
Genetic variants : HAPMAP7263
Genomic Variants (DGV)TST [DGVbeta]
DECIPHERTST [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTST 
Mutations
ICGC Data PortalTST 
TCGA Data PortalTST 
Broad Tumor PortalTST
OASIS PortalTST [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTST  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTST
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch TST
DgiDB (Drug Gene Interaction Database)TST
DoCM (Curated mutations)TST (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TST (select a term)
intoGenTST
Cancer3DTST(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180370   
Orphanet
DisGeNETTST
MedgenTST
Genetic Testing Registry TST
NextProtQ16762 [Medical]
TSGene7263
GENETestsTST
Target ValidationTST
Huge Navigator TST [HugePedia]
snp3D : Map Gene to Disease7263
BioCentury BCIQTST
ClinGenTST
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7263
Chemical/Pharm GKB GenePA37055
Clinical trialTST
Miscellaneous
canSAR (ICR)TST (select the gene name)
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTST
EVEXTST
GoPubMedTST
iHOPTST
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:44:29 CET 2017

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