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TSTD1 (thiosulfate sulfurtransferase like domain containing 1)

Identity

Alias_namesthiosulfate sulfurtransferase (rhodanese)-like domain containing 1
Alias_symbol (synonym)KAT
Other aliasTST
HGNC (Hugo) TSTD1
LocusID (NCBI) 100131187
Atlas_Id 75264
Location 1q23.3  [Link to chromosome band 1q23]
Location_base_pair Starts at 161037632 and ends at 161038984 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSTD1   35410
Cards
Entrez_Gene (NCBI)TSTD1  100131187  thiosulfate sulfurtransferase like domain containing 1
AliasesKAT; TST
GeneCards (Weizmann)TSTD1
Ensembl hg19 (Hinxton)ENSG00000215845 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215845 [Gene_View]  ENSG00000215845 [Sequence]  chr1:161037632-161038984 [Contig_View]  TSTD1 [Vega]
ICGC DataPortalENSG00000215845
TCGA cBioPortalTSTD1
AceView (NCBI)TSTD1
Genatlas (Paris)TSTD1
WikiGenes100131187
SOURCE (Princeton)TSTD1
Genetics Home Reference (NIH)TSTD1
Genomic and cartography
GoldenPath hg38 (UCSC)TSTD1  -     chr1:161037632-161038984 -  1q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSTD1  -     1q23.3   [Description]    (hg19-Feb_2009)
GoldenPathTSTD1 - 1q23.3 [CytoView hg19]  TSTD1 - 1q23.3 [CytoView hg38]
ImmunoBaseENSG00000215845
Mapping of homologs : NCBITSTD1 [Mapview hg19]  TSTD1 [Mapview hg38]
OMIM616041   
Gene and transcription
Genbank (Entrez)AV688621 BC001699 BC038219 CD675389
RefSeq transcript (Entrez)NM_001113205 NM_001113206 NM_001113207
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSTD1
Cluster EST : UnigeneHs.720030 [ NCBI ]
CGAP (NCI)Hs.720030
Alternative Splicing GalleryENSG00000215845
Gene ExpressionTSTD1 [ NCBI-GEO ]   TSTD1 [ EBI - ARRAY_EXPRESS ]   TSTD1 [ SEEK ]   TSTD1 [ MEM ]
Gene Expression Viewer (FireBrowse)TSTD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100131187
GTEX Portal (Tissue expression)TSTD1
Human Protein AtlasENSG00000215845-TSTD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFU3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NFU3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NFU3
Splice isoforms : SwissVarQ8NFU3
PhosPhoSitePlusQ8NFU3
Domaine pattern : Prosite (Expaxy)RHODANESE_3 (PS50206)   
Domains : Interpro (EBI)Rhodanese-like_dom    Rhodanese-like_dom_sf   
Domain families : Pfam (Sanger)Rhodanese (PF00581)   
Domain families : Pfam (NCBI)pfam00581   
Domain families : Smart (EMBL)RHOD (SM00450)  
Conserved Domain (NCBI)TSTD1
DMDM Disease mutations100131187
Blocks (Seattle)TSTD1
PDB (RSDB)6BEV   
PDB Europe6BEV   
PDB (PDBSum)6BEV   
PDB (IMB)6BEV   
Structural Biology KnowledgeBase6BEV   
SCOP (Structural Classification of Proteins)6BEV   
CATH (Classification of proteins structures)6BEV   
SuperfamilyQ8NFU3
Human Protein Atlas [tissue]ENSG00000215845-TSTD1 [tissue]
Peptide AtlasQ8NFU3
IPIIPI00965497   IPI00607735   IPI00645501   IPI00514310   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFU3
IntAct (EBI)Q8NFU3
FunCoupENSG00000215845
BioGRIDTSTD1
STRING (EMBL)TSTD1
ZODIACTSTD1
Ontologies - Pathways
QuickGOQ8NFU3
Ontology : AmiGOcytoplasm  cytoplasm  cytosol  cytosol  cytoplasmic ribonucleoprotein granule  perinuclear region of cytoplasm  thiosulfate-thiol sulfurtransferase activity  sulfide oxidation, using sulfide:quinone oxidoreductase  
Ontology : EGO-EBIcytoplasm  cytoplasm  cytosol  cytosol  cytoplasmic ribonucleoprotein granule  perinuclear region of cytoplasm  thiosulfate-thiol sulfurtransferase activity  sulfide oxidation, using sulfide:quinone oxidoreductase  
NDEx NetworkTSTD1
Atlas of Cancer Signalling NetworkTSTD1
Wikipedia pathwaysTSTD1
Orthology - Evolution
OrthoDB100131187
GeneTree (enSembl)ENSG00000215845
Phylogenetic Trees/Animal Genes : TreeFamTSTD1
HOGENOMQ8NFU3
Homologs : HomoloGeneTSTD1
Homology/Alignments : Family Browser (UCSC)TSTD1
Gene fusions - Rearrangements
Fusion : QuiverTSTD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSTD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSTD1
dbVarTSTD1
ClinVarTSTD1
1000_GenomesTSTD1 
Exome Variant ServerTSTD1
ExAC (Exome Aggregation Consortium)ENSG00000215845
GNOMAD BrowserENSG00000215845
Varsome BrowserTSTD1
Genetic variants : HAPMAP100131187
Genomic Variants (DGV)TSTD1 [DGVbeta]
DECIPHERTSTD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSTD1 
Mutations
ICGC Data PortalTSTD1 
TCGA Data PortalTSTD1 
Broad Tumor PortalTSTD1
OASIS PortalTSTD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSTD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSTD1
Mutations and Diseases : HGMDTSTD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSTD1
DgiDB (Drug Gene Interaction Database)TSTD1
DoCM (Curated mutations)TSTD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSTD1 (select a term)
intoGenTSTD1
Cancer3DTSTD1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616041   
Orphanet
DisGeNETTSTD1
MedgenTSTD1
Genetic Testing Registry TSTD1
NextProtQ8NFU3 [Medical]
TSGene100131187
GENETestsTSTD1
Target ValidationTSTD1
Huge Navigator TSTD1 [HugePedia]
snp3D : Map Gene to Disease100131187
BioCentury BCIQTSTD1
ClinGenTSTD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100131187
Chemical/Pharm GKB GenePA165752768
Clinical trialTSTD1
Miscellaneous
canSAR (ICR)TSTD1 (select the gene name)
DataMed IndexTSTD1
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSTD1
EVEXTSTD1
GoPubMedTSTD1
iHOPTSTD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:11:40 CEST 2019

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