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TSTD2 (thiosulfate sulfurtransferase (rhodanese)-like domain containing 2)

Identity

Alias_namesC9orf97
chromosome 9 open reading frame 97
thiosulfate sulfurtransferase (rhodanese)-like domain containing 2
Alias_symbol (synonym)PP4189
Other alias
HGNC (Hugo) TSTD2
LocusID (NCBI) 158427
Atlas_Id 75265
Location 9q22.33  [Link to chromosome band 9q22]
Location_base_pair Starts at 100362362 and ends at 100395962 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CLDN11 (3q26.2) / TSTD2 (9q22.33)PAK1 (11q13.5) / TSTD2 (9q22.33)TSTD2 (9q22.33) / KRT4 (12q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSTD2   30087
Cards
Entrez_Gene (NCBI)TSTD2  158427  thiosulfate sulfurtransferase (rhodanese)-like domain containing 2
AliasesC9orf97
GeneCards (Weizmann)TSTD2
Ensembl hg19 (Hinxton)ENSG00000136925 [Gene_View]  chr9:100362362-100395962 [Contig_View]  TSTD2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000136925 [Gene_View]  chr9:100362362-100395962 [Contig_View]  TSTD2 [Vega]
ICGC DataPortalENSG00000136925
TCGA cBioPortalTSTD2
AceView (NCBI)TSTD2
Genatlas (Paris)TSTD2
WikiGenes158427
SOURCE (Princeton)TSTD2
Genetics Home Reference (NIH)TSTD2
Genomic and cartography
GoldenPath hg19 (UCSC)TSTD2  -     chr9:100362362-100395962 -  9q22.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TSTD2  -     9q22.33   [Description]    (hg38-Dec_2013)
EnsemblTSTD2 - 9q22.33 [CytoView hg19]  TSTD2 - 9q22.33 [CytoView hg38]
Mapping of homologs : NCBITSTD2 [Mapview hg19]  TSTD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF258575 AK056453 AK056752 AK094043 AK122809
RefSeq transcript (Entrez)NM_139246
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)TSTD2
Cluster EST : UnigeneHs.723236 [ NCBI ]
CGAP (NCI)Hs.723236
Alternative Splicing GalleryENSG00000136925
Gene ExpressionTSTD2 [ NCBI-GEO ]   TSTD2 [ EBI - ARRAY_EXPRESS ]   TSTD2 [ SEEK ]   TSTD2 [ MEM ]
Gene Expression Viewer (FireBrowse)TSTD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158427
GTEX Portal (Tissue expression)TSTD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T7W7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T7W7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T7W7
Splice isoforms : SwissVarQ5T7W7
PhosPhoSitePlusQ5T7W7
Domaine pattern : Prosite (Expaxy)RHODANESE_3 (PS50206)   
Domains : Interpro (EBI)Rhodanese-like_dom   
Domain families : Pfam (Sanger)Rhodanese (PF00581)   
Domain families : Pfam (NCBI)pfam00581   
Domain families : Smart (EMBL)RHOD (SM00450)  
Conserved Domain (NCBI)TSTD2
DMDM Disease mutations158427
Blocks (Seattle)TSTD2
SuperfamilyQ5T7W7
Human Protein AtlasENSG00000136925
Peptide AtlasQ5T7W7
HPRD16679
IPIIPI00465147   IPI00383180   IPI00642317   IPI00514245   IPI00382823   
Protein Interaction databases
DIP (DOE-UCLA)Q5T7W7
IntAct (EBI)Q5T7W7
FunCoupENSG00000136925
BioGRIDTSTD2
STRING (EMBL)TSTD2
ZODIACTSTD2
Ontologies - Pathways
QuickGOQ5T7W7
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  
NDEx NetworkTSTD2
Atlas of Cancer Signalling NetworkTSTD2
Wikipedia pathwaysTSTD2
Orthology - Evolution
OrthoDB158427
GeneTree (enSembl)ENSG00000136925
Phylogenetic Trees/Animal Genes : TreeFamTSTD2
HOVERGENQ5T7W7
HOGENOMQ5T7W7
Homologs : HomoloGeneTSTD2
Homology/Alignments : Family Browser (UCSC)TSTD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSTD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSTD2
dbVarTSTD2
ClinVarTSTD2
1000_GenomesTSTD2 
Exome Variant ServerTSTD2
ExAC (Exome Aggregation Consortium)TSTD2 (select the gene name)
Genetic variants : HAPMAP158427
Genomic Variants (DGV)TSTD2 [DGVbeta]
DECIPHER (Syndromes)9:100362362-100395962  ENSG00000136925
CONAN: Copy Number AnalysisTSTD2 
Mutations
ICGC Data PortalTSTD2 
TCGA Data PortalTSTD2 
Broad Tumor PortalTSTD2
OASIS PortalTSTD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSTD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTSTD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSTD2
DgiDB (Drug Gene Interaction Database)TSTD2
DoCM (Curated mutations)TSTD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSTD2 (select a term)
intoGenTSTD2
Cancer3DTSTD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTSTD2
Genetic Testing Registry TSTD2
NextProtQ5T7W7 [Medical]
TSGene158427
GENETestsTSTD2
Huge Navigator TSTD2 [HugePedia]
snp3D : Map Gene to Disease158427
BioCentury BCIQTSTD2
ClinGenTSTD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158427
Chemical/Pharm GKB GenePA165586365
Clinical trialTSTD2
Miscellaneous
canSAR (ICR)TSTD2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSTD2
EVEXTSTD2
GoPubMedTSTD2
iHOPTSTD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:05 CET 2017

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