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TSTD3 (thiosulfate sulfurtransferase (rhodanese)-like domain containing 3)

Identity

Other alias-
HGNC (Hugo) TSTD3
LocusID (NCBI) 100130890
Atlas_Id 75266
Location 6q16.2  [Link to chromosome band 6q16]
Location_base_pair Starts at 99520994 and ends at 99533183 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TSTD3   40910
Cards
Entrez_Gene (NCBI)TSTD3  100130890  thiosulfate sulfurtransferase (rhodanese)-like domain containing 3
Aliases
GeneCards (Weizmann)TSTD3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:99520994-99533183 [Contig_View]  TSTD3 [Vega]
TCGA cBioPortalTSTD3
AceView (NCBI)TSTD3
Genatlas (Paris)TSTD3
WikiGenes100130890
SOURCE (Princeton)TSTD3
Genetics Home Reference (NIH)TSTD3
Genomic and cartography
GoldenPath hg38 (UCSC)TSTD3  -     chr6:99520994-99533183 +  6q16.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSTD3  -     6q16.2   [Description]    (hg19-Feb_2009)
EnsemblTSTD3 - 6q16.2 [CytoView hg19]  TSTD3 - 6q16.2 [CytoView hg38]
Mapping of homologs : NCBITSTD3 [Mapview hg19]  TSTD3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC047952 BX647075 DN996863
RefSeq transcript (Entrez)NM_001195131
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSTD3
Cluster EST : UnigeneHs.634506 [ NCBI ]
CGAP (NCI)Hs.634506
Gene ExpressionTSTD3 [ NCBI-GEO ]   TSTD3 [ EBI - ARRAY_EXPRESS ]   TSTD3 [ SEEK ]   TSTD3 [ MEM ]
Gene Expression Viewer (FireBrowse)TSTD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100130890
GTEX Portal (Tissue expression)TSTD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtH0UI37   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtH0UI37  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProH0UI37
Splice isoforms : SwissVarH0UI37
PhosPhoSitePlusH0UI37
Domains : Interpro (EBI)Rhodanese-like_dom   
Domain families : Pfam (Sanger)Rhodanese (PF00581)   
Domain families : Pfam (NCBI)pfam00581   
Conserved Domain (NCBI)TSTD3
DMDM Disease mutations100130890
Blocks (Seattle)TSTD3
SuperfamilyH0UI37
Peptide AtlasH0UI37
IPIIPI00884356   
Protein Interaction databases
DIP (DOE-UCLA)H0UI37
IntAct (EBI)H0UI37
BioGRIDTSTD3
STRING (EMBL)TSTD3
ZODIACTSTD3
Ontologies - Pathways
QuickGOH0UI37
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTSTD3
Atlas of Cancer Signalling NetworkTSTD3
Wikipedia pathwaysTSTD3
Orthology - Evolution
OrthoDB100130890
Phylogenetic Trees/Animal Genes : TreeFamTSTD3
HOVERGENH0UI37
HOGENOMH0UI37
Homologs : HomoloGeneTSTD3
Homology/Alignments : Family Browser (UCSC)TSTD3
Gene fusions - Rearrangements
Fusion : QuiverTSTD3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSTD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSTD3
dbVarTSTD3
ClinVarTSTD3
1000_GenomesTSTD3 
Exome Variant ServerTSTD3
Varsome BrowserTSTD3
Genetic variants : HAPMAP100130890
Genomic Variants (DGV)TSTD3 [DGVbeta]
DECIPHERTSTD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSTD3 
Mutations
ICGC Data PortalTSTD3 
TCGA Data PortalTSTD3 
Broad Tumor PortalTSTD3
OASIS PortalTSTD3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTSTD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSTD3
DgiDB (Drug Gene Interaction Database)TSTD3
DoCM (Curated mutations)TSTD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSTD3 (select a term)
intoGenTSTD3
Cancer3DTSTD3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTSTD3
MedgenTSTD3
Genetic Testing Registry TSTD3
NextProtH0UI37 [Medical]
TSGene100130890
GENETestsTSTD3
Target ValidationTSTD3
Huge Navigator TSTD3 [HugePedia]
snp3D : Map Gene to Disease100130890
BioCentury BCIQTSTD3
ClinGenTSTD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130890
Chemical/Pharm GKB GenePA166049070
Clinical trialTSTD3
Miscellaneous
canSAR (ICR)TSTD3 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSTD3
EVEXTSTD3
GoPubMedTSTD3
iHOPTSTD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:36:59 CEST 2018

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