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TTC13 (tetratricopeptide repeat domain 13)

Identity

Alias_symbol (synonym)FLJ22584
Other alias-
HGNC (Hugo) TTC13
LocusID (NCBI) 79573
Atlas_Id 75268
Location 1q42.2  [Link to chromosome band 1q42]
Location_base_pair Starts at 230906241 and ends at 230978872 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TTC13 (1q42.2) / JAK2 (9p24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC13   26204
Cards
Entrez_Gene (NCBI)TTC13  79573  tetratricopeptide repeat domain 13
Aliases
GeneCards (Weizmann)TTC13
Ensembl hg19 (Hinxton)ENSG00000143643 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143643 [Gene_View]  chr1:230906241-230978872 [Contig_View]  TTC13 [Vega]
ICGC DataPortalENSG00000143643
TCGA cBioPortalTTC13
AceView (NCBI)TTC13
Genatlas (Paris)TTC13
WikiGenes79573
SOURCE (Princeton)TTC13
Genetics Home Reference (NIH)TTC13
Genomic and cartography
GoldenPath hg38 (UCSC)TTC13  -     chr1:230906241-230978872 -  1q42.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC13  -     1q42.2   [Description]    (hg19-Feb_2009)
EnsemblTTC13 - 1q42.2 [CytoView hg19]  TTC13 - 1q42.2 [CytoView hg38]
Mapping of homologs : NCBITTC13 [Mapview hg19]  TTC13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026237 AK074365 AK075386 AK075561 AK309725
RefSeq transcript (Entrez)NM_001122835 NM_024525
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC13
Cluster EST : UnigeneHs.424788 [ NCBI ]
CGAP (NCI)Hs.424788
Alternative Splicing GalleryENSG00000143643
Gene ExpressionTTC13 [ NCBI-GEO ]   TTC13 [ EBI - ARRAY_EXPRESS ]   TTC13 [ SEEK ]   TTC13 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79573
GTEX Portal (Tissue expression)TTC13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBP0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBP0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBP0
Splice isoforms : SwissVarQ8NBP0
PhosPhoSitePlusQ8NBP0
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_1    TPR_repeat   
Domain families : Pfam (Sanger)TPR_1 (PF00515)    TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam00515    pfam13181   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC13
DMDM Disease mutations79573
Blocks (Seattle)TTC13
SuperfamilyQ8NBP0
Human Protein AtlasENSG00000143643
Peptide AtlasQ8NBP0
HPRD15578
IPIIPI00301227   IPI00941418   IPI00890709   IPI00981568   IPI00973741   IPI00976863   IPI00973734   IPI00978833   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBP0
IntAct (EBI)Q8NBP0
FunCoupENSG00000143643
BioGRIDTTC13
STRING (EMBL)TTC13
ZODIACTTC13
Ontologies - Pathways
QuickGOQ8NBP0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTTC13
Atlas of Cancer Signalling NetworkTTC13
Wikipedia pathwaysTTC13
Orthology - Evolution
OrthoDB79573
GeneTree (enSembl)ENSG00000143643
Phylogenetic Trees/Animal Genes : TreeFamTTC13
HOVERGENQ8NBP0
HOGENOMQ8NBP0
Homologs : HomoloGeneTTC13
Homology/Alignments : Family Browser (UCSC)TTC13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC13
dbVarTTC13
ClinVarTTC13
1000_GenomesTTC13 
Exome Variant ServerTTC13
ExAC (Exome Aggregation Consortium)TTC13 (select the gene name)
Genetic variants : HAPMAP79573
Genomic Variants (DGV)TTC13 [DGVbeta]
DECIPHERTTC13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC13 
Mutations
ICGC Data PortalTTC13 
TCGA Data PortalTTC13 
Broad Tumor PortalTTC13
OASIS PortalTTC13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC13
DgiDB (Drug Gene Interaction Database)TTC13
DoCM (Curated mutations)TTC13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC13 (select a term)
intoGenTTC13
Cancer3DTTC13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTC13
Genetic Testing Registry TTC13
NextProtQ8NBP0 [Medical]
TSGene79573
GENETestsTTC13
Target ValidationTTC13
Huge Navigator TTC13 [HugePedia]
snp3D : Map Gene to Disease79573
BioCentury BCIQTTC13
ClinGenTTC13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79573
Chemical/Pharm GKB GenePA134931681
Clinical trialTTC13
Miscellaneous
canSAR (ICR)TTC13 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC13
EVEXTTC13
GoPubMedTTC13
iHOPTTC13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:47 CEST 2017

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