Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TTC16 (tetratricopeptide repeat domain 16)

Identity

Alias (NCBI)-
HGNC (Hugo) TTC16
HGNC Alias symbFLJ32780
LocusID (NCBI) 158248
Atlas_Id 75270
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 127716079 and ends at 127731590 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TTC16   26536
Cards
Entrez_Gene (NCBI)TTC16    tetratricopeptide repeat domain 16
Aliases
GeneCards (Weizmann)TTC16
Ensembl hg19 (Hinxton)ENSG00000167094 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167094 [Gene_View]  ENSG00000167094 [Sequence]  chr9:127716079-127731590 [Contig_View]  TTC16 [Vega]
ICGC DataPortalENSG00000167094
TCGA cBioPortalTTC16
AceView (NCBI)TTC16
Genatlas (Paris)TTC16
SOURCE (Princeton)TTC16
Genetics Home Reference (NIH)TTC16
Genomic and cartography
GoldenPath hg38 (UCSC)TTC16  -     chr9:127716079-127731590 +  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC16  -     9q34.11   [Description]    (hg19-Feb_2009)
GoldenPathTTC16 - 9q34.11 [CytoView hg19]  TTC16 - 9q34.11 [CytoView hg38]
ImmunoBaseENSG00000167094
Genome Data Viewer NCBITTC16 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK057342 AK074105 AK128011 AK294862 AK302422
RefSeq transcript (Entrez)NM_001317037 NM_144965
Consensus coding sequences : CCDS (NCBI)TTC16
Gene ExpressionTTC16 [ NCBI-GEO ]   TTC16 [ EBI - ARRAY_EXPRESS ]   TTC16 [ SEEK ]   TTC16 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC16 [ Firebrowse - Broad ]
GenevisibleExpression of TTC16 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158248
GTEX Portal (Tissue expression)TTC16
Human Protein AtlasENSG00000167094-TTC16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEE8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEE8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEE8
PhosPhoSitePlusQ8NEE8
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom_sf    TPR_1    TPR_repeat   
Domain families : Pfam (Sanger)TPR_1 (PF00515)   
Domain families : Pfam (NCBI)pfam00515   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC16
SuperfamilyQ8NEE8
AlphaFold pdb e-kbQ8NEE8   
Human Protein Atlas [tissue]ENSG00000167094-TTC16 [tissue]
HPRD15581
Protein Interaction databases
DIP (DOE-UCLA)Q8NEE8
IntAct (EBI)Q8NEE8
BioGRIDTTC16
STRING (EMBL)TTC16
ZODIACTTC16
Ontologies - Pathways
QuickGOQ8NEE8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTTC16
Atlas of Cancer Signalling NetworkTTC16
Wikipedia pathwaysTTC16
Orthology - Evolution
OrthoDB158248
GeneTree (enSembl)ENSG00000167094
Phylogenetic Trees/Animal Genes : TreeFamTTC16
Homologs : HomoloGeneTTC16
Homology/Alignments : Family Browser (UCSC)TTC16
Gene fusions - Rearrangements
Fusion : QuiverTTC16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC16
dbVarTTC16
ClinVarTTC16
MonarchTTC16
1000_GenomesTTC16 
Exome Variant ServerTTC16
GNOMAD BrowserENSG00000167094
Varsome BrowserTTC16
ACMGTTC16 variants
VarityQ8NEE8
Genomic Variants (DGV)TTC16 [DGVbeta]
DECIPHERTTC16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC16 
Mutations
ICGC Data PortalTTC16 
TCGA Data PortalTTC16 
Broad Tumor PortalTTC16
OASIS PortalTTC16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC16  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTTC16
Mutations and Diseases : HGMDTTC16
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTTC16
DgiDB (Drug Gene Interaction Database)TTC16
DoCM (Curated mutations)TTC16
CIViC (Clinical Interpretations of Variants in Cancer)TTC16
Cancer3DTTC16
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTTC16
MedgenTTC16
Genetic Testing Registry TTC16
NextProtQ8NEE8 [Medical]
GENETestsTTC16
Target ValidationTTC16
Huge Navigator TTC16 [HugePedia]
ClinGenTTC16
Clinical trials, drugs, therapy
MyCancerGenomeTTC16
Protein Interactions : CTDTTC16
Pharm GKB GenePA134871808
PharosQ8NEE8
Clinical trialTTC16
Miscellaneous
canSAR (ICR)TTC16
HarmonizomeTTC16
DataMed IndexTTC16
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTTC16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:15 CEST 2021

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