Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TTC16 (tetratricopeptide repeat domain 16)

Identity

Alias_symbol (synonym)FLJ32780
Other alias-
HGNC (Hugo) TTC16
LocusID (NCBI) 158248
Atlas_Id 75270
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 127716064 and ends at 127731600 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC16   26536
Cards
Entrez_Gene (NCBI)TTC16  158248  tetratricopeptide repeat domain 16
Aliases
GeneCards (Weizmann)TTC16
Ensembl hg19 (Hinxton)ENSG00000167094 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167094 [Gene_View]  chr9:127716064-127731600 [Contig_View]  TTC16 [Vega]
ICGC DataPortalENSG00000167094
TCGA cBioPortalTTC16
AceView (NCBI)TTC16
Genatlas (Paris)TTC16
WikiGenes158248
SOURCE (Princeton)TTC16
Genetics Home Reference (NIH)TTC16
Genomic and cartography
GoldenPath hg38 (UCSC)TTC16  -     chr9:127716064-127731600 +  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC16  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblTTC16 - 9q34.11 [CytoView hg19]  TTC16 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBITTC16 [Mapview hg19]  TTC16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057342 AK074105 AK128011 AK294862 AK302422
RefSeq transcript (Entrez)NM_001317037 NM_144965
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC16
Cluster EST : UnigeneHs.642748 [ NCBI ]
CGAP (NCI)Hs.642748
Alternative Splicing GalleryENSG00000167094
Gene ExpressionTTC16 [ NCBI-GEO ]   TTC16 [ EBI - ARRAY_EXPRESS ]   TTC16 [ SEEK ]   TTC16 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158248
GTEX Portal (Tissue expression)TTC16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEE8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEE8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEE8
Splice isoforms : SwissVarQ8NEE8
PhosPhoSitePlusQ8NEE8
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_1    TPR_repeat   
Domain families : Pfam (Sanger)TPR_1 (PF00515)   
Domain families : Pfam (NCBI)pfam00515   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC16
DMDM Disease mutations158248
Blocks (Seattle)TTC16
SuperfamilyQ8NEE8
Human Protein AtlasENSG00000167094
Peptide AtlasQ8NEE8
HPRD15581
IPIIPI00335108   IPI00902850   IPI00873122   IPI00444052   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEE8
IntAct (EBI)Q8NEE8
FunCoupENSG00000167094
BioGRIDTTC16
STRING (EMBL)TTC16
ZODIACTTC16
Ontologies - Pathways
QuickGOQ8NEE8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTTC16
Atlas of Cancer Signalling NetworkTTC16
Wikipedia pathwaysTTC16
Orthology - Evolution
OrthoDB158248
GeneTree (enSembl)ENSG00000167094
Phylogenetic Trees/Animal Genes : TreeFamTTC16
HOVERGENQ8NEE8
HOGENOMQ8NEE8
Homologs : HomoloGeneTTC16
Homology/Alignments : Family Browser (UCSC)TTC16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC16
dbVarTTC16
ClinVarTTC16
1000_GenomesTTC16 
Exome Variant ServerTTC16
ExAC (Exome Aggregation Consortium)TTC16 (select the gene name)
Genetic variants : HAPMAP158248
Genomic Variants (DGV)TTC16 [DGVbeta]
DECIPHERTTC16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC16 
Mutations
ICGC Data PortalTTC16 
TCGA Data PortalTTC16 
Broad Tumor PortalTTC16
OASIS PortalTTC16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC16
DgiDB (Drug Gene Interaction Database)TTC16
DoCM (Curated mutations)TTC16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC16 (select a term)
intoGenTTC16
Cancer3DTTC16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTC16
Genetic Testing Registry TTC16
NextProtQ8NEE8 [Medical]
TSGene158248
GENETestsTTC16
Target ValidationTTC16
Huge Navigator TTC16 [HugePedia]
snp3D : Map Gene to Disease158248
BioCentury BCIQTTC16
ClinGenTTC16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158248
Chemical/Pharm GKB GenePA134871808
Clinical trialTTC16
Miscellaneous
canSAR (ICR)TTC16 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC16
EVEXTTC16
GoPubMedTTC16
iHOPTTC16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:47:29 CEST 2017

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