Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TTC17 (tetratricopeptide repeat domain 17)

Identity

Alias (NCBI)-
HGNC (Hugo) TTC17
HGNC Alias symbFLJ10890
LocusID (NCBI) 55761
Atlas_Id 54731
Location 11p12  [Link to chromosome band 11p12]
Location_base_pair Starts at 43358920 and ends at 43494929 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BIRC2 (11q22.2) / TTC17 (11p12)BMPR2 (2q33.1) / TTC17 (11p12)TTC17 (11p12) / TNFRSF1A (12p13.31)
TTC17 (11p12) / TTC28 (22q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)TTC17   25596
Cards
Entrez_Gene (NCBI)TTC17    tetratricopeptide repeat domain 17
Aliases
GeneCards (Weizmann)TTC17
Ensembl hg19 (Hinxton)ENSG00000052841 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000052841 [Gene_View]  ENSG00000052841 [Sequence]  chr11:43358920-43494929 [Contig_View]  TTC17 [Vega]
ICGC DataPortalENSG00000052841
TCGA cBioPortalTTC17
AceView (NCBI)TTC17
Genatlas (Paris)TTC17
SOURCE (Princeton)TTC17
Genetics Home Reference (NIH)TTC17
Genomic and cartography
GoldenPath hg38 (UCSC)TTC17  -     chr11:43358920-43494929 +  11p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC17  -     11p12   [Description]    (hg19-Feb_2009)
GoldenPathTTC17 - 11p12 [CytoView hg19]  TTC17 - 11p12 [CytoView hg38]
ImmunoBaseENSG00000052841
Genome Data Viewer NCBITTC17 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF161431 AK001540 AK001752 AK023161 AK026217
RefSeq transcript (Entrez)NM_001307943 NM_001376525 NM_001376526 NM_001376527 NM_001376528 NM_018259
Consensus coding sequences : CCDS (NCBI)TTC17
Gene ExpressionTTC17 [ NCBI-GEO ]   TTC17 [ EBI - ARRAY_EXPRESS ]   TTC17 [ SEEK ]   TTC17 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC17 [ Firebrowse - Broad ]
GenevisibleExpression of TTC17 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55761
GTEX Portal (Tissue expression)TTC17
Human Protein AtlasENSG00000052841-TTC17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AE7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96AE7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96AE7
PhosPhoSitePlusQ96AE7
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom_sf    TPR_repeat   
Domain families : Pfam (Sanger)TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam13181   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC17
SuperfamilyQ96AE7
AlphaFold pdb e-kbQ96AE7   
Human Protein Atlas [tissue]ENSG00000052841-TTC17 [tissue]
HPRD15582
Protein Interaction databases
DIP (DOE-UCLA)Q96AE7
IntAct (EBI)Q96AE7
BioGRIDTTC17
STRING (EMBL)TTC17
ZODIACTTC17
Ontologies - Pathways
QuickGOQ96AE7
Ontology : AmiGOprotein binding  cytoplasm  cytoplasm  cytosol  plasma membrane  actin cytoskeleton  actin cytoskeleton  actin filament polymerization  actin filament polymerization  cilium organization  cilium organization  
Ontology : EGO-EBIprotein binding  cytoplasm  cytoplasm  cytosol  plasma membrane  actin cytoskeleton  actin cytoskeleton  actin filament polymerization  actin filament polymerization  cilium organization  cilium organization  
NDEx NetworkTTC17
Atlas of Cancer Signalling NetworkTTC17
Wikipedia pathwaysTTC17
Orthology - Evolution
OrthoDB55761
GeneTree (enSembl)ENSG00000052841
Phylogenetic Trees/Animal Genes : TreeFamTTC17
Homologs : HomoloGeneTTC17
Homology/Alignments : Family Browser (UCSC)TTC17
Gene fusions - Rearrangements
Fusion : MitelmanTTC17/TTC28 [11p12/22q12.1]  
Fusion : QuiverTTC17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC17
dbVarTTC17
ClinVarTTC17
MonarchTTC17
1000_GenomesTTC17 
Exome Variant ServerTTC17
GNOMAD BrowserENSG00000052841
Varsome BrowserTTC17
ACMGTTC17 variants
VarityQ96AE7
Genomic Variants (DGV)TTC17 [DGVbeta]
DECIPHERTTC17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC17 
Mutations
ICGC Data PortalTTC17 
TCGA Data PortalTTC17 
Broad Tumor PortalTTC17
OASIS PortalTTC17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC17  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTTC17
Mutations and Diseases : HGMDTTC17
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTTC17
DgiDB (Drug Gene Interaction Database)TTC17
DoCM (Curated mutations)TTC17
CIViC (Clinical Interpretations of Variants in Cancer)TTC17
Cancer3DTTC17
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTTC17
MedgenTTC17
Genetic Testing Registry TTC17
NextProtQ96AE7 [Medical]
GENETestsTTC17
Target ValidationTTC17
Huge Navigator TTC17 [HugePedia]
ClinGenTTC17
Clinical trials, drugs, therapy
MyCancerGenomeTTC17
Protein Interactions : CTDTTC17
Pharm GKB GenePA134912435
PharosQ96AE7
Clinical trialTTC17
Miscellaneous
canSAR (ICR)TTC17
HarmonizomeTTC17
DataMed IndexTTC17
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTTC17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:43 CEST 2021
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