Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TTC21A (tetratricopeptide repeat domain 21A)

Identity

Alias_symbol (synonym)STI2
IFT139A
Other alias
HGNC (Hugo) TTC21A
LocusID (NCBI) 199223
Atlas_Id 75271
Location 3p22.2  [Link to chromosome band 3p22]
Location_base_pair Starts at 39149152 and ends at 39180394 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TTC21A (3p22.2) / SALL2 (14q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC21A   30761
Cards
Entrez_Gene (NCBI)TTC21A  199223  tetratricopeptide repeat domain 21A
AliasesSTI2
GeneCards (Weizmann)TTC21A
Ensembl hg19 (Hinxton)ENSG00000168026 [Gene_View]  chr3:39149152-39180394 [Contig_View]  TTC21A [Vega]
Ensembl hg38 (Hinxton)ENSG00000168026 [Gene_View]  chr3:39149152-39180394 [Contig_View]  TTC21A [Vega]
ICGC DataPortalENSG00000168026
TCGA cBioPortalTTC21A
AceView (NCBI)TTC21A
Genatlas (Paris)TTC21A
WikiGenes199223
SOURCE (Princeton)TTC21A
Genetics Home Reference (NIH)TTC21A
Genomic and cartography
GoldenPath hg19 (UCSC)TTC21A  -     chr3:39149152-39180394 +  3p22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TTC21A  -     3p22.2   [Description]    (hg38-Dec_2013)
EnsemblTTC21A - 3p22.2 [CytoView hg19]  TTC21A - 3p22.2 [CytoView hg38]
Mapping of homologs : NCBITTC21A [Mapview hg19]  TTC21A [Mapview hg38]
OMIM611430   
Gene and transcription
Genbank (Entrez)AA843452 AJ487015 AK022483 AK093313 AK098528
RefSeq transcript (Entrez)NM_001105513 NM_145755
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)TTC21A
Cluster EST : UnigeneHs.443935 [ NCBI ]
CGAP (NCI)Hs.443935
Alternative Splicing GalleryENSG00000168026
Gene ExpressionTTC21A [ NCBI-GEO ]   TTC21A [ EBI - ARRAY_EXPRESS ]   TTC21A [ SEEK ]   TTC21A [ MEM ]
Gene Expression Viewer (FireBrowse)TTC21A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)199223
GTEX Portal (Tissue expression)TTC21A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDW8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDW8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDW8
Splice isoforms : SwissVarQ8NDW8
PhosPhoSitePlusQ8NDW8
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_2    TPR_repeat   
Domain families : Pfam (Sanger)TPR_2 (PF07719)   
Domain families : Pfam (NCBI)pfam07719   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC21A
DMDM Disease mutations199223
Blocks (Seattle)TTC21A
SuperfamilyQ8NDW8
Human Protein AtlasENSG00000168026
Peptide AtlasQ8NDW8
HPRD10254
IPIIPI00798044   IPI00848079   IPI00954089   IPI00953907   IPI00168607   IPI00909540   IPI01013381   IPI00791207   IPI00924802   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDW8
IntAct (EBI)Q8NDW8
FunCoupENSG00000168026
BioGRIDTTC21A
STRING (EMBL)TTC21A
ZODIACTTC21A
Ontologies - Pathways
QuickGOQ8NDW8
Ontology : AmiGOcilium  intraciliary transport particle A  intraciliary retrograde transport  cilium morphogenesis  protein localization to cilium  
Ontology : EGO-EBIcilium  intraciliary transport particle A  intraciliary retrograde transport  cilium morphogenesis  protein localization to cilium  
NDEx NetworkTTC21A
Atlas of Cancer Signalling NetworkTTC21A
Wikipedia pathwaysTTC21A
Orthology - Evolution
OrthoDB199223
GeneTree (enSembl)ENSG00000168026
Phylogenetic Trees/Animal Genes : TreeFamTTC21A
HOVERGENQ8NDW8
HOGENOMQ8NDW8
Homologs : HomoloGeneTTC21A
Homology/Alignments : Family Browser (UCSC)TTC21A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC21A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC21A
dbVarTTC21A
ClinVarTTC21A
1000_GenomesTTC21A 
Exome Variant ServerTTC21A
ExAC (Exome Aggregation Consortium)TTC21A (select the gene name)
Genetic variants : HAPMAP199223
Genomic Variants (DGV)TTC21A [DGVbeta]
DECIPHER (Syndromes)3:39149152-39180394  ENSG00000168026
CONAN: Copy Number AnalysisTTC21A 
Mutations
ICGC Data PortalTTC21A 
TCGA Data PortalTTC21A 
Broad Tumor PortalTTC21A
OASIS PortalTTC21A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC21A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC21A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC21A
DgiDB (Drug Gene Interaction Database)TTC21A
DoCM (Curated mutations)TTC21A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC21A (select a term)
intoGenTTC21A
Cancer3DTTC21A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611430   
Orphanet
MedgenTTC21A
Genetic Testing Registry TTC21A
NextProtQ8NDW8 [Medical]
TSGene199223
GENETestsTTC21A
Huge Navigator TTC21A [HugePedia]
snp3D : Map Gene to Disease199223
BioCentury BCIQTTC21A
ClinGenTTC21A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD199223
Chemical/Pharm GKB GenePA134915959
Clinical trialTTC21A
Miscellaneous
canSAR (ICR)TTC21A (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC21A
EVEXTTC21A
GoPubMedTTC21A
iHOPTTC21A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:06 CET 2017

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