Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TTC22 (tetratricopeptide repeat domain 22)

Identity

Alias (NCBI)-
HGNC (Hugo) TTC22
HGNC Alias symbFLJ20619
LocusID (NCBI) 55001
Atlas_Id 57854
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 54784551 and ends at 54801323 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TTC22   26067
Cards
Entrez_Gene (NCBI)TTC22    tetratricopeptide repeat domain 22
Aliases
GeneCards (Weizmann)TTC22
Ensembl hg19 (Hinxton)ENSG00000006555 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000006555 [Gene_View]  ENSG00000006555 [Sequence]  chr1:54784551-54801323 [Contig_View]  TTC22 [Vega]
ICGC DataPortalENSG00000006555
TCGA cBioPortalTTC22
AceView (NCBI)TTC22
Genatlas (Paris)TTC22
SOURCE (Princeton)TTC22
Genetics Home Reference (NIH)TTC22
Genomic and cartography
GoldenPath hg38 (UCSC)TTC22  -     chr1:54784551-54801323 -  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC22  -     1p32.3   [Description]    (hg19-Feb_2009)
GoldenPathTTC22 - 1p32.3 [CytoView hg19]  TTC22 - 1p32.3 [CytoView hg38]
ImmunoBaseENSG00000006555
Genome Data Viewer NCBITTC22 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI923972 AK000626 AL049431 AW170453 AW195337
RefSeq transcript (Entrez)NM_001114108 NM_017904
Consensus coding sequences : CCDS (NCBI)TTC22
Gene ExpressionTTC22 [ NCBI-GEO ]   TTC22 [ EBI - ARRAY_EXPRESS ]   TTC22 [ SEEK ]   TTC22 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC22 [ Firebrowse - Broad ]
GenevisibleExpression of TTC22 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55001
GTEX Portal (Tissue expression)TTC22
Human Protein AtlasENSG00000006555-TTC22 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TAA0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TAA0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TAA0
PhosPhoSitePlusQ5TAA0
Domains : Interpro (EBI)TPR-like_helical_dom_sf    TPR_repeat    TTC22   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC22
SuperfamilyQ5TAA0
AlphaFold pdb e-kbQ5TAA0   
Human Protein Atlas [tissue]ENSG00000006555-TTC22 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q5TAA0
IntAct (EBI)Q5TAA0
BioGRIDTTC22
STRING (EMBL)TTC22
ZODIACTTC22
Ontologies - Pathways
QuickGOQ5TAA0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTTC22
Atlas of Cancer Signalling NetworkTTC22
Wikipedia pathwaysTTC22
Orthology - Evolution
OrthoDB55001
GeneTree (enSembl)ENSG00000006555
Phylogenetic Trees/Animal Genes : TreeFamTTC22
Homologs : HomoloGeneTTC22
Homology/Alignments : Family Browser (UCSC)TTC22
Gene fusions - Rearrangements
Fusion : QuiverTTC22
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC22
dbVarTTC22
ClinVarTTC22
MonarchTTC22
1000_GenomesTTC22 
Exome Variant ServerTTC22
GNOMAD BrowserENSG00000006555
Varsome BrowserTTC22
ACMGTTC22 variants
VarityQ5TAA0
Genomic Variants (DGV)TTC22 [DGVbeta]
DECIPHERTTC22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC22 
Mutations
ICGC Data PortalTTC22 
TCGA Data PortalTTC22 
Broad Tumor PortalTTC22
OASIS PortalTTC22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC22  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTTC22
Mutations and Diseases : HGMDTTC22
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTTC22
DgiDB (Drug Gene Interaction Database)TTC22
DoCM (Curated mutations)TTC22
CIViC (Clinical Interpretations of Variants in Cancer)TTC22
Cancer3DTTC22
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTTC22
MedgenTTC22
Genetic Testing Registry TTC22
NextProtQ5TAA0 [Medical]
GENETestsTTC22
Target ValidationTTC22
Huge Navigator TTC22 [HugePedia]
ClinGenTTC22
Clinical trials, drugs, therapy
MyCancerGenomeTTC22
Protein Interactions : CTDTTC22
Pharm GKB GenePA142670674
PharosQ5TAA0
Clinical trialTTC22
Miscellaneous
canSAR (ICR)TTC22
HarmonizomeTTC22
DataMed IndexTTC22
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTTC22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:43 CEST 2021

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