Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TTC22 (tetratricopeptide repeat domain 22)

Identity

Alias_symbol (synonym)FLJ20619
Other alias-
HGNC (Hugo) TTC22
LocusID (NCBI) 55001
Atlas_Id 75274
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 54781079 and ends at 54801268 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC22   26067
Cards
Entrez_Gene (NCBI)TTC22  55001  tetratricopeptide repeat domain 22
Aliases
GeneCards (Weizmann)TTC22
Ensembl hg19 (Hinxton)ENSG00000006555 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000006555 [Gene_View]  chr1:54781079-54801268 [Contig_View]  TTC22 [Vega]
ICGC DataPortalENSG00000006555
TCGA cBioPortalTTC22
AceView (NCBI)TTC22
Genatlas (Paris)TTC22
WikiGenes55001
SOURCE (Princeton)TTC22
Genetics Home Reference (NIH)TTC22
Genomic and cartography
GoldenPath hg38 (UCSC)TTC22  -     chr1:54781079-54801268 -  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC22  -     1p32.3   [Description]    (hg19-Feb_2009)
EnsemblTTC22 - 1p32.3 [CytoView hg19]  TTC22 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBITTC22 [Mapview hg19]  TTC22 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI923972 AK000626 AL049431 AW170453 AW195337
RefSeq transcript (Entrez)NM_001114108 NM_017904
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC22
Cluster EST : UnigeneHs.16230 [ NCBI ]
CGAP (NCI)Hs.16230
Alternative Splicing GalleryENSG00000006555
Gene ExpressionTTC22 [ NCBI-GEO ]   TTC22 [ EBI - ARRAY_EXPRESS ]   TTC22 [ SEEK ]   TTC22 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55001
GTEX Portal (Tissue expression)TTC22
Human Protein AtlasENSG00000006555-TTC22 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TAA0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TAA0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TAA0
Splice isoforms : SwissVarQ5TAA0
PhosPhoSitePlusQ5TAA0
Domains : Interpro (EBI)TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC22
DMDM Disease mutations55001
Blocks (Seattle)TTC22
SuperfamilyQ5TAA0
Human Protein Atlas [tissue]ENSG00000006555-TTC22 [tissue]
Peptide AtlasQ5TAA0
HPRD07932
IPIIPI00514025   IPI00016663   IPI00513799   
Protein Interaction databases
DIP (DOE-UCLA)Q5TAA0
IntAct (EBI)Q5TAA0
FunCoupENSG00000006555
BioGRIDTTC22
STRING (EMBL)TTC22
ZODIACTTC22
Ontologies - Pathways
QuickGOQ5TAA0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTTC22
Atlas of Cancer Signalling NetworkTTC22
Wikipedia pathwaysTTC22
Orthology - Evolution
OrthoDB55001
GeneTree (enSembl)ENSG00000006555
Phylogenetic Trees/Animal Genes : TreeFamTTC22
HOVERGENQ5TAA0
HOGENOMQ5TAA0
Homologs : HomoloGeneTTC22
Homology/Alignments : Family Browser (UCSC)TTC22
Gene fusions - Rearrangements
Fusion: Tumor Portal TTC22
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC22
dbVarTTC22
ClinVarTTC22
1000_GenomesTTC22 
Exome Variant ServerTTC22
ExAC (Exome Aggregation Consortium)ENSG00000006555
GNOMAD BrowserENSG00000006555
Genetic variants : HAPMAP55001
Genomic Variants (DGV)TTC22 [DGVbeta]
DECIPHERTTC22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC22 
Mutations
ICGC Data PortalTTC22 
TCGA Data PortalTTC22 
Broad Tumor PortalTTC22
OASIS PortalTTC22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC22
DgiDB (Drug Gene Interaction Database)TTC22
DoCM (Curated mutations)TTC22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC22 (select a term)
intoGenTTC22
Cancer3DTTC22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTC22
Genetic Testing Registry TTC22
NextProtQ5TAA0 [Medical]
TSGene55001
GENETestsTTC22
Target ValidationTTC22
Huge Navigator TTC22 [HugePedia]
snp3D : Map Gene to Disease55001
BioCentury BCIQTTC22
ClinGenTTC22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55001
Chemical/Pharm GKB GenePA142670674
Clinical trialTTC22
Miscellaneous
canSAR (ICR)TTC22 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC22
EVEXTTC22
GoPubMedTTC22
iHOPTTC22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:34:21 CET 2017

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