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TTC23 (tetratricopeptide repeat domain 23)

Identity

Alias_symbol (synonym)FLJ12572
HCC-8
Other alias
HGNC (Hugo) TTC23
LocusID (NCBI) 64927
Atlas_Id 75275
Location 15q26.3  [Link to chromosome band 15q26]
Location_base_pair Starts at 99136323 and ends at 99249619 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADK (10q22.2) / TTC23 (15q26.3)BBS4 (15q24.1) / TTC23 (15q26.3)HCST (19q13.12) / TTC23 (15q26.3)
IGF1R (15q26.3) / TTC23 (15q26.3)ADK TTC23BBS4 TTC23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC23   25730
Cards
Entrez_Gene (NCBI)TTC23  64927  tetratricopeptide repeat domain 23
AliasesHCC-8
GeneCards (Weizmann)TTC23
Ensembl hg19 (Hinxton)ENSG00000103852 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103852 [Gene_View]  chr15:99136323-99249619 [Contig_View]  TTC23 [Vega]
ICGC DataPortalENSG00000103852
TCGA cBioPortalTTC23
AceView (NCBI)TTC23
Genatlas (Paris)TTC23
WikiGenes64927
SOURCE (Princeton)TTC23
Genetics Home Reference (NIH)TTC23
Genomic and cartography
GoldenPath hg38 (UCSC)TTC23  -     chr15:99136323-99249619 -  15q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC23  -     15q26.3   [Description]    (hg19-Feb_2009)
EnsemblTTC23 - 15q26.3 [CytoView hg19]  TTC23 - 15q26.3 [CytoView hg38]
Mapping of homologs : NCBITTC23 [Mapview hg19]  TTC23 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF411456 AK022634 AK023001 AK023230 AK222580
RefSeq transcript (Entrez)NM_001040655 NM_001040656 NM_001040657 NM_001040658 NM_001040659 NM_001040660 NM_001288615 NM_001288616 NM_022905
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC23
Cluster EST : UnigeneHs.737076 [ NCBI ]
CGAP (NCI)Hs.737076
Alternative Splicing GalleryENSG00000103852
Gene ExpressionTTC23 [ NCBI-GEO ]   TTC23 [ EBI - ARRAY_EXPRESS ]   TTC23 [ SEEK ]   TTC23 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64927
GTEX Portal (Tissue expression)TTC23
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5W5X9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5W5X9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5W5X9
Splice isoforms : SwissVarQ5W5X9
PhosPhoSitePlusQ5W5X9
Domains : Interpro (EBI)TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC23
DMDM Disease mutations64927
Blocks (Seattle)TTC23
SuperfamilyQ5W5X9
Human Protein AtlasENSG00000103852
Peptide AtlasQ5W5X9
HPRD07777
IPIIPI00149605   IPI00847184   IPI00847288   IPI00848349   IPI00852948   IPI00979815   
Protein Interaction databases
DIP (DOE-UCLA)Q5W5X9
IntAct (EBI)Q5W5X9
FunCoupENSG00000103852
BioGRIDTTC23
STRING (EMBL)TTC23
ZODIACTTC23
Ontologies - Pathways
QuickGOQ5W5X9
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkTTC23
Atlas of Cancer Signalling NetworkTTC23
Wikipedia pathwaysTTC23
Orthology - Evolution
OrthoDB64927
GeneTree (enSembl)ENSG00000103852
Phylogenetic Trees/Animal Genes : TreeFamTTC23
HOVERGENQ5W5X9
HOGENOMQ5W5X9
Homologs : HomoloGeneTTC23
Homology/Alignments : Family Browser (UCSC)TTC23
Gene fusions - Rearrangements
Fusion: TCGAADK TTC23
Fusion: TCGABBS4 TTC23
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC23
dbVarTTC23
ClinVarTTC23
1000_GenomesTTC23 
Exome Variant ServerTTC23
ExAC (Exome Aggregation Consortium)TTC23 (select the gene name)
Genetic variants : HAPMAP64927
Genomic Variants (DGV)TTC23 [DGVbeta]
DECIPHERTTC23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC23 
Mutations
ICGC Data PortalTTC23 
TCGA Data PortalTTC23 
Broad Tumor PortalTTC23
OASIS PortalTTC23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC23  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC23
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC23
DgiDB (Drug Gene Interaction Database)TTC23
DoCM (Curated mutations)TTC23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC23 (select a term)
intoGenTTC23
Cancer3DTTC23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTC23
Genetic Testing Registry TTC23
NextProtQ5W5X9 [Medical]
TSGene64927
GENETestsTTC23
Target ValidationTTC23
Huge Navigator TTC23 [HugePedia]
snp3D : Map Gene to Disease64927
BioCentury BCIQTTC23
ClinGenTTC23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64927
Chemical/Pharm GKB GenePA142670675
Clinical trialTTC23
Miscellaneous
canSAR (ICR)TTC23 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC23
EVEXTTC23
GoPubMedTTC23
iHOPTTC23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:47:30 CEST 2017

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