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TTC23 (tetratricopeptide repeat domain 23)

Identity

Alias (NCBI)HCC-8
HGNC (Hugo) TTC23
HGNC Alias symbFLJ12572
HCC-8
LocusID (NCBI) 64927
Atlas_Id 75275
Location 15q26.3  [Link to chromosome band 15q26]
Location_base_pair Starts at 99136323 and ends at 99251225 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADK (10q22.2) / TTC23 (15q26.3)BBS4 (15q24.1) / TTC23 (15q26.3)HCST (19q13.12) / TTC23 (15q26.3)
IGF1R (15q26.3) / TTC23 (15q26.3)ADK TTC23BBS4 TTC23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TTC23   25730
Cards
Entrez_Gene (NCBI)TTC23    tetratricopeptide repeat domain 23
AliasesHCC-8
GeneCards (Weizmann)TTC23
Ensembl hg19 (Hinxton)ENSG00000103852 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103852 [Gene_View]  ENSG00000103852 [Sequence]  chr15:99136323-99251225 [Contig_View]  TTC23 [Vega]
ICGC DataPortalENSG00000103852
TCGA cBioPortalTTC23
AceView (NCBI)TTC23
Genatlas (Paris)TTC23
SOURCE (Princeton)TTC23
Genetics Home Reference (NIH)TTC23
Genomic and cartography
GoldenPath hg38 (UCSC)TTC23  -     chr15:99136323-99251225 -  15q26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC23  -     15q26.3   [Description]    (hg19-Feb_2009)
GoldenPathTTC23 - 15q26.3 [CytoView hg19]  TTC23 - 15q26.3 [CytoView hg38]
ImmunoBaseENSG00000103852
Genome Data Viewer NCBITTC23 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF411456 AK022634 AK023001 AK023230 AK222580
RefSeq transcript (Entrez)NM_001040655 NM_001040656 NM_001040657 NM_001040658 NM_001040659 NM_001040660 NM_001288615 NM_001288616 NM_001353869 NM_022905
Consensus coding sequences : CCDS (NCBI)TTC23
Gene ExpressionTTC23 [ NCBI-GEO ]   TTC23 [ EBI - ARRAY_EXPRESS ]   TTC23 [ SEEK ]   TTC23 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC23 [ Firebrowse - Broad ]
GenevisibleExpression of TTC23 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64927
GTEX Portal (Tissue expression)TTC23
Human Protein AtlasENSG00000103852-TTC23 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5W5X9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5W5X9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5W5X9
PhosPhoSitePlusQ5W5X9
Domains : Interpro (EBI)TPR-like_helical_dom_sf    TPR_repeat    TTC23/TTC23L   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC23
SuperfamilyQ5W5X9
AlphaFold pdb e-kbQ5W5X9   
Human Protein Atlas [tissue]ENSG00000103852-TTC23 [tissue]
HPRD07777
Protein Interaction databases
DIP (DOE-UCLA)Q5W5X9
IntAct (EBI)Q5W5X9
BioGRIDTTC23
STRING (EMBL)TTC23
ZODIACTTC23
Ontologies - Pathways
QuickGOQ5W5X9
Ontology : AmiGOprotein binding  cilium  positive regulation of smoothened signaling pathway  
Ontology : EGO-EBIprotein binding  cilium  positive regulation of smoothened signaling pathway  
NDEx NetworkTTC23
Atlas of Cancer Signalling NetworkTTC23
Wikipedia pathwaysTTC23
Orthology - Evolution
OrthoDB64927
GeneTree (enSembl)ENSG00000103852
Phylogenetic Trees/Animal Genes : TreeFamTTC23
Homologs : HomoloGeneTTC23
Homology/Alignments : Family Browser (UCSC)TTC23
Gene fusions - Rearrangements
Fusion : QuiverTTC23
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC23
dbVarTTC23
ClinVarTTC23
MonarchTTC23
1000_GenomesTTC23 
Exome Variant ServerTTC23
GNOMAD BrowserENSG00000103852
Varsome BrowserTTC23
ACMGTTC23 variants
VarityQ5W5X9
Genomic Variants (DGV)TTC23 [DGVbeta]
DECIPHERTTC23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC23 
Mutations
ICGC Data PortalTTC23 
TCGA Data PortalTTC23 
Broad Tumor PortalTTC23
OASIS PortalTTC23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC23  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTTC23
Mutations and Diseases : HGMDTTC23
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTTC23
DgiDB (Drug Gene Interaction Database)TTC23
DoCM (Curated mutations)TTC23
CIViC (Clinical Interpretations of Variants in Cancer)TTC23
Cancer3DTTC23
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTTC23
MedgenTTC23
Genetic Testing Registry TTC23
NextProtQ5W5X9 [Medical]
GENETestsTTC23
Target ValidationTTC23
Huge Navigator TTC23 [HugePedia]
ClinGenTTC23
Clinical trials, drugs, therapy
MyCancerGenomeTTC23
Protein Interactions : CTDTTC23
Pharm GKB GenePA142670675
PharosQ5W5X9
Clinical trialTTC23
Miscellaneous
canSAR (ICR)TTC23
HarmonizomeTTC23
DataMed IndexTTC23
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTTC23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:16 CEST 2021

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