Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TTC23L (tetratricopeptide repeat domain 23 like)

Identity

Alias_namestetratricopeptide repeat domain 23-like
Alias_symbol (synonym)FLJ25439
Other aliasMC25-1
HGNC (Hugo) TTC23L
LocusID (NCBI) 153657
Atlas_Id 75276
Location 5p13.2  [Link to chromosome band 5p13]
Location_base_pair Starts at 34839624 and ends at 34900501 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC23L   26355
Cards
Entrez_Gene (NCBI)TTC23L  153657  tetratricopeptide repeat domain 23 like
AliasesMC25-1
GeneCards (Weizmann)TTC23L
Ensembl hg19 (Hinxton)ENSG00000205838 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205838 [Gene_View]  chr5:34839624-34900501 [Contig_View]  TTC23L [Vega]
ICGC DataPortalENSG00000205838
TCGA cBioPortalTTC23L
AceView (NCBI)TTC23L
Genatlas (Paris)TTC23L
WikiGenes153657
SOURCE (Princeton)TTC23L
Genetics Home Reference (NIH)TTC23L
Genomic and cartography
GoldenPath hg38 (UCSC)TTC23L  -     chr5:34839624-34900501 +  5p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC23L  -     5p13.2   [Description]    (hg19-Feb_2009)
EnsemblTTC23L - 5p13.2 [CytoView hg19]  TTC23L - 5p13.2 [CytoView hg38]
Mapping of homologs : NCBITTC23L [Mapview hg19]  TTC23L [Mapview hg38]
OMIM616344   
Gene and transcription
Genbank (Entrez)AK058168 AK293829 AY498865 BC032871 BC057775
RefSeq transcript (Entrez)NM_001317949 NM_144725
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC23L
Cluster EST : UnigeneHs.435742 [ NCBI ]
CGAP (NCI)Hs.435742
Alternative Splicing GalleryENSG00000205838
Gene ExpressionTTC23L [ NCBI-GEO ]   TTC23L [ EBI - ARRAY_EXPRESS ]   TTC23L [ SEEK ]   TTC23L [ MEM ]
Gene Expression Viewer (FireBrowse)TTC23L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)153657
GTEX Portal (Tissue expression)TTC23L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PF05   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PF05  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PF05
Splice isoforms : SwissVarQ6PF05
PhosPhoSitePlusQ6PF05
Domains : Interpro (EBI)TPR-like_helical_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TTC23L
DMDM Disease mutations153657
Blocks (Seattle)TTC23L
SuperfamilyQ6PF05
Human Protein AtlasENSG00000205838
Peptide AtlasQ6PF05
HPRD08691
IPIIPI00798431   IPI00892617   IPI00894101   IPI01018789   IPI00966237   
Protein Interaction databases
DIP (DOE-UCLA)Q6PF05
IntAct (EBI)Q6PF05
FunCoupENSG00000205838
BioGRIDTTC23L
STRING (EMBL)TTC23L
ZODIACTTC23L
Ontologies - Pathways
QuickGOQ6PF05
Ontology : AmiGOprotein binding  cytoplasm  microtubule organizing center  spindle  midbody  response to endoplasmic reticulum stress  
Ontology : EGO-EBIprotein binding  cytoplasm  microtubule organizing center  spindle  midbody  response to endoplasmic reticulum stress  
NDEx NetworkTTC23L
Atlas of Cancer Signalling NetworkTTC23L
Wikipedia pathwaysTTC23L
Orthology - Evolution
OrthoDB153657
GeneTree (enSembl)ENSG00000205838
Phylogenetic Trees/Animal Genes : TreeFamTTC23L
HOVERGENQ6PF05
HOGENOMQ6PF05
Homologs : HomoloGeneTTC23L
Homology/Alignments : Family Browser (UCSC)TTC23L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC23L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC23L
dbVarTTC23L
ClinVarTTC23L
1000_GenomesTTC23L 
Exome Variant ServerTTC23L
ExAC (Exome Aggregation Consortium)TTC23L (select the gene name)
Genetic variants : HAPMAP153657
Genomic Variants (DGV)TTC23L [DGVbeta]
DECIPHERTTC23L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC23L 
Mutations
ICGC Data PortalTTC23L 
TCGA Data PortalTTC23L 
Broad Tumor PortalTTC23L
OASIS PortalTTC23L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC23L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC23L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC23L
DgiDB (Drug Gene Interaction Database)TTC23L
DoCM (Curated mutations)TTC23L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC23L (select a term)
intoGenTTC23L
Cancer3DTTC23L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616344   
Orphanet
MedgenTTC23L
Genetic Testing Registry TTC23L
NextProtQ6PF05 [Medical]
TSGene153657
GENETestsTTC23L
Target ValidationTTC23L
Huge Navigator TTC23L [HugePedia]
snp3D : Map Gene to Disease153657
BioCentury BCIQTTC23L
ClinGenTTC23L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD153657
Chemical/Pharm GKB GenePA162407169
Clinical trialTTC23L
Miscellaneous
canSAR (ICR)TTC23L (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC23L
EVEXTTC23L
GoPubMedTTC23L
iHOPTTC23L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:47:30 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.