Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TTC25 (tetratricopeptide repeat domain 25)

Identity

Alias_symbol (synonym)DKFZP434H0115
Other alias-
HGNC (Hugo) TTC25
LocusID (NCBI) 83538
Atlas_Id 75278
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41930594 and ends at 41966517 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC25   25280
Cards
Entrez_Gene (NCBI)TTC25  83538  tetratricopeptide repeat domain 25
Aliases
GeneCards (Weizmann)TTC25
Ensembl hg19 (Hinxton)ENSG00000204815 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204815 [Gene_View]  chr17:41930594-41966517 [Contig_View]  TTC25 [Vega]
ICGC DataPortalENSG00000204815
TCGA cBioPortalTTC25
AceView (NCBI)TTC25
Genatlas (Paris)TTC25
WikiGenes83538
SOURCE (Princeton)TTC25
Genetics Home Reference (NIH)TTC25
Genomic and cartography
GoldenPath hg38 (UCSC)TTC25  -     chr17:41930594-41966517 +  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC25  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblTTC25 - 17q21.2 [CytoView hg19]  TTC25 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBITTC25 [Mapview hg19]  TTC25 [Mapview hg38]
OMIM617092   617095   
Gene and transcription
Genbank (Entrez)AK055498 AL136760 AM393695 BC025390 BC067297
RefSeq transcript (Entrez)NM_001350319 NM_031421
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC25
Cluster EST : UnigeneHs.245720 [ NCBI ]
CGAP (NCI)Hs.245720
Alternative Splicing GalleryENSG00000204815
Gene ExpressionTTC25 [ NCBI-GEO ]   TTC25 [ EBI - ARRAY_EXPRESS ]   TTC25 [ SEEK ]   TTC25 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83538
GTEX Portal (Tissue expression)TTC25
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NG3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NG3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NG3
Splice isoforms : SwissVarQ96NG3
PhosPhoSitePlusQ96NG3
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam13181   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC25
DMDM Disease mutations83538
Blocks (Seattle)TTC25
SuperfamilyQ96NG3
Human Protein AtlasENSG00000204815
Peptide AtlasQ96NG3
HPRD10888
IPIIPI00549869   IPI00448796   
Protein Interaction databases
DIP (DOE-UCLA)Q96NG3
IntAct (EBI)Q96NG3
FunCoupENSG00000204815
BioGRIDTTC25
STRING (EMBL)TTC25
ZODIACTTC25
Ontologies - Pathways
QuickGOQ96NG3
Ontology : AmiGOprotein binding  cytoplasm  cytoskeleton  cell projection  
Ontology : EGO-EBIprotein binding  cytoplasm  cytoskeleton  cell projection  
NDEx NetworkTTC25
Atlas of Cancer Signalling NetworkTTC25
Wikipedia pathwaysTTC25
Orthology - Evolution
OrthoDB83538
GeneTree (enSembl)ENSG00000204815
Phylogenetic Trees/Animal Genes : TreeFamTTC25
HOVERGENQ96NG3
HOGENOMQ96NG3
Homologs : HomoloGeneTTC25
Homology/Alignments : Family Browser (UCSC)TTC25
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC25
dbVarTTC25
ClinVarTTC25
1000_GenomesTTC25 
Exome Variant ServerTTC25
ExAC (Exome Aggregation Consortium)TTC25 (select the gene name)
Genetic variants : HAPMAP83538
Genomic Variants (DGV)TTC25 [DGVbeta]
DECIPHERTTC25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC25 
Mutations
ICGC Data PortalTTC25 
TCGA Data PortalTTC25 
Broad Tumor PortalTTC25
OASIS PortalTTC25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC25
DgiDB (Drug Gene Interaction Database)TTC25
DoCM (Curated mutations)TTC25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC25 (select a term)
intoGenTTC25
Cancer3DTTC25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617092    617095   
Orphanet665   
MedgenTTC25
Genetic Testing Registry TTC25
NextProtQ96NG3 [Medical]
TSGene83538
GENETestsTTC25
Target ValidationTTC25
Huge Navigator TTC25 [HugePedia]
snp3D : Map Gene to Disease83538
BioCentury BCIQTTC25
ClinGenTTC25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83538
Chemical/Pharm GKB GenePA142670677
Clinical trialTTC25
Miscellaneous
canSAR (ICR)TTC25 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC25
EVEXTTC25
GoPubMedTTC25
iHOPTTC25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:47:30 CEST 2017

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