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TTC26 (tetratricopeptide repeat domain 26)

Identity

Alias_symbol (synonym)FLJ12571
dyf-13
DYF13
IFT56
Other alias
HGNC (Hugo) TTC26
LocusID (NCBI) 79989
Atlas_Id 75279
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 138818490 and ends at 138876732 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TTC26 (7q34) / ZFP36L1 (14q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC26   21882
Cards
Entrez_Gene (NCBI)TTC26  79989  tetratricopeptide repeat domain 26
AliasesDYF13; dyf-13
GeneCards (Weizmann)TTC26
Ensembl hg19 (Hinxton)ENSG00000105948 [Gene_View]  chr7:138818490-138876732 [Contig_View]  TTC26 [Vega]
Ensembl hg38 (Hinxton)ENSG00000105948 [Gene_View]  chr7:138818490-138876732 [Contig_View]  TTC26 [Vega]
ICGC DataPortalENSG00000105948
TCGA cBioPortalTTC26
AceView (NCBI)TTC26
Genatlas (Paris)TTC26
WikiGenes79989
SOURCE (Princeton)TTC26
Genetics Home Reference (NIH)TTC26
Genomic and cartography
GoldenPath hg19 (UCSC)TTC26  -     chr7:138818490-138876732 +  7q34   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TTC26  -     7q34   [Description]    (hg38-Dec_2013)
EnsemblTTC26 - 7q34 [CytoView hg19]  TTC26 - 7q34 [CytoView hg38]
Mapping of homologs : NCBITTC26 [Mapview hg19]  TTC26 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI375270 AK022633 AK293444 AK295092 AK299132
RefSeq transcript (Entrez)NM_001144920 NM_001144923 NM_001287512 NM_001287513 NM_024926
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)TTC26
Cluster EST : UnigeneHs.644553 [ NCBI ]
CGAP (NCI)Hs.644553
Alternative Splicing GalleryENSG00000105948
Gene ExpressionTTC26 [ NCBI-GEO ]   TTC26 [ EBI - ARRAY_EXPRESS ]   TTC26 [ SEEK ]   TTC26 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC26 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79989
GTEX Portal (Tissue expression)TTC26
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0AVF1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0AVF1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0AVF1
Splice isoforms : SwissVarA0AVF1
PhosPhoSitePlusA0AVF1
Domaine pattern : Prosite (Expaxy)TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TTC26   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TTC26
DMDM Disease mutations79989
Blocks (Seattle)TTC26
SuperfamilyA0AVF1
Human Protein AtlasENSG00000105948
Peptide AtlasA0AVF1
HPRD07776
IPIIPI00328172   IPI00921448   IPI00946826   IPI00947064   IPI00922371   IPI00921967   
Protein Interaction databases
DIP (DOE-UCLA)A0AVF1
IntAct (EBI)A0AVF1
FunCoupENSG00000105948
BioGRIDTTC26
STRING (EMBL)TTC26
ZODIACTTC26
Ontologies - Pathways
QuickGOA0AVF1
Ontology : AmiGOcentrosome  organelle organization  smoothened signaling pathway  protein transport  intraciliary transport particle B  ciliary basal body  intraciliary transport  cilium assembly  primary cilium  primary cilium  ciliary tip  
Ontology : EGO-EBIcentrosome  organelle organization  smoothened signaling pathway  protein transport  intraciliary transport particle B  ciliary basal body  intraciliary transport  cilium assembly  primary cilium  primary cilium  ciliary tip  
NDEx NetworkTTC26
Atlas of Cancer Signalling NetworkTTC26
Wikipedia pathwaysTTC26
Orthology - Evolution
OrthoDB79989
GeneTree (enSembl)ENSG00000105948
Phylogenetic Trees/Animal Genes : TreeFamTTC26
HOVERGENA0AVF1
HOGENOMA0AVF1
Homologs : HomoloGeneTTC26
Homology/Alignments : Family Browser (UCSC)TTC26
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC26 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC26
dbVarTTC26
ClinVarTTC26
1000_GenomesTTC26 
Exome Variant ServerTTC26
ExAC (Exome Aggregation Consortium)TTC26 (select the gene name)
Genetic variants : HAPMAP79989
Genomic Variants (DGV)TTC26 [DGVbeta]
DECIPHER (Syndromes)7:138818490-138876732  ENSG00000105948
CONAN: Copy Number AnalysisTTC26 
Mutations
ICGC Data PortalTTC26 
TCGA Data PortalTTC26 
Broad Tumor PortalTTC26
OASIS PortalTTC26 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC26  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC26
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC26
DgiDB (Drug Gene Interaction Database)TTC26
DoCM (Curated mutations)TTC26 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC26 (select a term)
intoGenTTC26
Cancer3DTTC26(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTTC26
Genetic Testing Registry TTC26
NextProtA0AVF1 [Medical]
TSGene79989
GENETestsTTC26
Huge Navigator TTC26 [HugePedia]
snp3D : Map Gene to Disease79989
BioCentury BCIQTTC26
ClinGenTTC26
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79989
Chemical/Pharm GKB GenePA144596245
Clinical trialTTC26
Miscellaneous
canSAR (ICR)TTC26 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC26
EVEXTTC26
GoPubMedTTC26
iHOPTTC26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:50:08 CET 2017

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