Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TTC26 (tetratricopeptide repeat domain 26)

Identity

Alias (NCBI)DYF13
IFT56
dyf-13
HGNC (Hugo) TTC26
HGNC Alias symbFLJ12571
dyf-13
DYF13
IFT56
LocusID (NCBI) 79989
Atlas_Id 75279
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 139133778 and ends at 139191986 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TTC26 (7q34) / ZFP36L1 (14q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TTC26   21882
Cards
Entrez_Gene (NCBI)TTC26    tetratricopeptide repeat domain 26
AliasesDYF13; IFT56; dyf-13
GeneCards (Weizmann)TTC26
Ensembl hg19 (Hinxton)ENSG00000105948 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105948 [Gene_View]  ENSG00000105948 [Sequence]  chr7:139133778-139191986 [Contig_View]  TTC26 [Vega]
ICGC DataPortalENSG00000105948
TCGA cBioPortalTTC26
AceView (NCBI)TTC26
Genatlas (Paris)TTC26
SOURCE (Princeton)TTC26
Genetics Home Reference (NIH)TTC26
Genomic and cartography
GoldenPath hg38 (UCSC)TTC26  -     chr7:139133778-139191986 +  7q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC26  -     7q34   [Description]    (hg19-Feb_2009)
GoldenPathTTC26 - 7q34 [CytoView hg19]  TTC26 - 7q34 [CytoView hg38]
ImmunoBaseENSG00000105948
Genome Data Viewer NCBITTC26 [Mapview hg19]  
OMIM617453   
Gene and transcription
Genbank (Entrez)AI375270 AK022633 AK293444 AK295092 AK299132
RefSeq transcript (Entrez)NM_001144920 NM_001144923 NM_001287512 NM_001287513 NM_001318333 NM_001321740 NM_001321741 NM_001321742 NM_024926
Consensus coding sequences : CCDS (NCBI)TTC26
Gene ExpressionTTC26 [ NCBI-GEO ]   TTC26 [ EBI - ARRAY_EXPRESS ]   TTC26 [ SEEK ]   TTC26 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC26 [ Firebrowse - Broad ]
GenevisibleExpression of TTC26 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79989
GTEX Portal (Tissue expression)TTC26
Human Protein AtlasENSG00000105948-TTC26 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0AVF1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0AVF1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0AVF1
PhosPhoSitePlusA0AVF1
Domaine pattern : Prosite (Expaxy)TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom_sf    TPR_repeat    TTC26   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC26
SuperfamilyA0AVF1
AlphaFold pdb e-kbA0AVF1   
Human Protein Atlas [tissue]ENSG00000105948-TTC26 [tissue]
HPRD07776
Protein Interaction databases
DIP (DOE-UCLA)A0AVF1
IntAct (EBI)A0AVF1
BioGRIDTTC26
STRING (EMBL)TTC26
ZODIACTTC26
Ontologies - Pathways
QuickGOA0AVF1
Ontology : AmiGOcentrosome  cilium  cilium  smoothened signaling pathway  protein transport  intraciliary transport particle B  intraciliary transport particle B  axoneme assembly  intraciliary anterograde transport  intraciliary transport involved in cilium assembly  intraciliary transport involved in cilium assembly  ciliary basal body  intraciliary transport  cilium assembly  protein localization to cilium  ciliary tip  ciliary base  intraciliary transport particle B binding  manchette assembly  
Ontology : EGO-EBIcentrosome  cilium  cilium  smoothened signaling pathway  protein transport  intraciliary transport particle B  intraciliary transport particle B  axoneme assembly  intraciliary anterograde transport  intraciliary transport involved in cilium assembly  intraciliary transport involved in cilium assembly  ciliary basal body  intraciliary transport  cilium assembly  protein localization to cilium  ciliary tip  ciliary base  intraciliary transport particle B binding  manchette assembly  
NDEx NetworkTTC26
Atlas of Cancer Signalling NetworkTTC26
Wikipedia pathwaysTTC26
Orthology - Evolution
OrthoDB79989
GeneTree (enSembl)ENSG00000105948
Phylogenetic Trees/Animal Genes : TreeFamTTC26
Homologs : HomoloGeneTTC26
Homology/Alignments : Family Browser (UCSC)TTC26
Gene fusions - Rearrangements
Fusion : QuiverTTC26
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC26 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC26
dbVarTTC26
ClinVarTTC26
MonarchTTC26
1000_GenomesTTC26 
Exome Variant ServerTTC26
GNOMAD BrowserENSG00000105948
Varsome BrowserTTC26
ACMGTTC26 variants
VarityA0AVF1
Genomic Variants (DGV)TTC26 [DGVbeta]
DECIPHERTTC26 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC26 
Mutations
ICGC Data PortalTTC26 
TCGA Data PortalTTC26 
Broad Tumor PortalTTC26
OASIS PortalTTC26 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC26  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTTC26
Mutations and Diseases : HGMDTTC26
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTTC26
DgiDB (Drug Gene Interaction Database)TTC26
DoCM (Curated mutations)TTC26
CIViC (Clinical Interpretations of Variants in Cancer)TTC26
Cancer3DTTC26
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617453   
Orphanet
DisGeNETTTC26
MedgenTTC26
Genetic Testing Registry TTC26
NextProtA0AVF1 [Medical]
GENETestsTTC26
Target ValidationTTC26
Huge Navigator TTC26 [HugePedia]
ClinGenTTC26
Clinical trials, drugs, therapy
MyCancerGenomeTTC26
Protein Interactions : CTDTTC26
Pharm GKB GenePA144596245
PharosA0AVF1
Clinical trialTTC26
Miscellaneous
canSAR (ICR)TTC26
HarmonizomeTTC26
DataMed IndexTTC26
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTTC26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:27:16 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.