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TTC27 (tetratricopeptide repeat domain 27)

Identity

Alias (NCBI)-
HGNC (Hugo) TTC27
HGNC Alias symbFLJ20272
LocusID (NCBI) 55622
Atlas_Id 75280
Location 2p22.3  [Link to chromosome band 2p22]
Location_base_pair Starts at 32628050 and ends at 32821051 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BIRC6 (2p22.3) / TTC27 (2p22.3)ELMOD3 (2p11.2) / TTC27 (2p22.3)LTBP1 (2p22.3) / TTC27 (2p22.3)
PPP3R1 (2p14) / TTC27 (2p22.3)TTC27 (2p22.3) / BIRC6 (2p22.3)TTC27 (2p22.3) / SPAST (2p22.3)
PPP3R1 TTC27ELMOD3 TTC27

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TTC27   25986
Cards
Entrez_Gene (NCBI)TTC27    tetratricopeptide repeat domain 27
Aliases
GeneCards (Weizmann)TTC27
Ensembl hg19 (Hinxton)ENSG00000018699 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000018699 [Gene_View]  ENSG00000018699 [Sequence]  chr2:32628050-32821051 [Contig_View]  TTC27 [Vega]
ICGC DataPortalENSG00000018699
TCGA cBioPortalTTC27
AceView (NCBI)TTC27
Genatlas (Paris)TTC27
SOURCE (Princeton)TTC27
Genetics Home Reference (NIH)TTC27
Genomic and cartography
GoldenPath hg38 (UCSC)TTC27  -     chr2:32628050-32821051 +  2p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC27  -     2p22.3   [Description]    (hg19-Feb_2009)
GoldenPathTTC27 - 2p22.3 [CytoView hg19]  TTC27 - 2p22.3 [CytoView hg38]
ImmunoBaseENSG00000018699
Genome Data Viewer NCBITTC27 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK000279 AK000665 AK027570 AK225295 AK299196
RefSeq transcript (Entrez)NM_001193509 NM_017735
Consensus coding sequences : CCDS (NCBI)TTC27
Gene ExpressionTTC27 [ NCBI-GEO ]   TTC27 [ EBI - ARRAY_EXPRESS ]   TTC27 [ SEEK ]   TTC27 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC27 [ Firebrowse - Broad ]
GenevisibleExpression of TTC27 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55622
GTEX Portal (Tissue expression)TTC27
Human Protein AtlasENSG00000018699-TTC27 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P3X3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P3X3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P3X3
PhosPhoSitePlusQ6P3X3
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom_sf    TPR_2    TPR_repeat   
Domain families : Pfam (Sanger)TPR_2 (PF07719)   
Domain families : Pfam (NCBI)pfam07719   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC27
SuperfamilyQ6P3X3
AlphaFold pdb e-kbQ6P3X3   
Human Protein Atlas [tissue]ENSG00000018699-TTC27 [tissue]
HPRD08618
Protein Interaction databases
DIP (DOE-UCLA)Q6P3X3
IntAct (EBI)Q6P3X3
BioGRIDTTC27
STRING (EMBL)TTC27
ZODIACTTC27
Ontologies - Pathways
QuickGOQ6P3X3
Ontology : AmiGOmolecular_function  protein binding  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  biological_process  
NDEx NetworkTTC27
Atlas of Cancer Signalling NetworkTTC27
Wikipedia pathwaysTTC27
Orthology - Evolution
OrthoDB55622
GeneTree (enSembl)ENSG00000018699
Phylogenetic Trees/Animal Genes : TreeFamTTC27
Homologs : HomoloGeneTTC27
Homology/Alignments : Family Browser (UCSC)TTC27
Gene fusions - Rearrangements
Fusion : QuiverTTC27
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC27
dbVarTTC27
ClinVarTTC27
MonarchTTC27
1000_GenomesTTC27 
Exome Variant ServerTTC27
GNOMAD BrowserENSG00000018699
Varsome BrowserTTC27
ACMGTTC27 variants
VarityQ6P3X3
Genomic Variants (DGV)TTC27 [DGVbeta]
DECIPHERTTC27 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC27 
Mutations
ICGC Data PortalTTC27 
TCGA Data PortalTTC27 
Broad Tumor PortalTTC27
OASIS PortalTTC27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC27  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTTC27
Mutations and Diseases : HGMDTTC27
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTTC27
DgiDB (Drug Gene Interaction Database)TTC27
DoCM (Curated mutations)TTC27
CIViC (Clinical Interpretations of Variants in Cancer)TTC27
Cancer3DTTC27
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTTC27
MedgenTTC27
Genetic Testing Registry TTC27
NextProtQ6P3X3 [Medical]
GENETestsTTC27
Target ValidationTTC27
Huge Navigator TTC27 [HugePedia]
ClinGenTTC27
Clinical trials, drugs, therapy
MyCancerGenomeTTC27
Protein Interactions : CTDTTC27
Pharm GKB GenePA145007326
PharosQ6P3X3
Clinical trialTTC27
Miscellaneous
canSAR (ICR)TTC27
HarmonizomeTTC27
DataMed IndexTTC27
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTTC27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:27:17 CEST 2021

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