Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TTC27 (tetratricopeptide repeat domain 27)

Identity

Alias_symbol (synonym)FLJ20272
Other alias-
HGNC (Hugo) TTC27
LocusID (NCBI) 55622
Atlas_Id 75280
Location 2p22.3  [Link to chromosome band 2p22]
Location_base_pair Starts at 32628020 and ends at 32821051 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BIRC6 (2p22.3) / TTC27 (2p22.3)ELMOD3 (2p11.2) / TTC27 (2p22.3)LTBP1 (2p22.3) / TTC27 (2p22.3)
PPP3R1 (2p14) / TTC27 (2p22.3)TTC27 (2p22.3) / BIRC6 (2p22.3)TTC27 (2p22.3) / SPAST (2p22.3)
PPP3R1 TTC27ELMOD3 TTC27

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC27   25986
Cards
Entrez_Gene (NCBI)TTC27  55622  tetratricopeptide repeat domain 27
Aliases
GeneCards (Weizmann)TTC27
Ensembl hg19 (Hinxton)ENSG00000018699 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000018699 [Gene_View]  chr2:32628020-32821051 [Contig_View]  TTC27 [Vega]
ICGC DataPortalENSG00000018699
TCGA cBioPortalTTC27
AceView (NCBI)TTC27
Genatlas (Paris)TTC27
WikiGenes55622
SOURCE (Princeton)TTC27
Genetics Home Reference (NIH)TTC27
Genomic and cartography
GoldenPath hg38 (UCSC)TTC27  -     chr2:32628020-32821051 +  2p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC27  -     2p22.3   [Description]    (hg19-Feb_2009)
EnsemblTTC27 - 2p22.3 [CytoView hg19]  TTC27 - 2p22.3 [CytoView hg38]
Mapping of homologs : NCBITTC27 [Mapview hg19]  TTC27 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000279 AK000665 AK027570 AK225295 AK299196
RefSeq transcript (Entrez)NM_001193509 NM_017735
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC27
Cluster EST : UnigeneHs.468125 [ NCBI ]
CGAP (NCI)Hs.468125
Alternative Splicing GalleryENSG00000018699
Gene ExpressionTTC27 [ NCBI-GEO ]   TTC27 [ EBI - ARRAY_EXPRESS ]   TTC27 [ SEEK ]   TTC27 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55622
GTEX Portal (Tissue expression)TTC27
Human Protein AtlasENSG00000018699-TTC27 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P3X3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P3X3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P3X3
Splice isoforms : SwissVarQ6P3X3
PhosPhoSitePlusQ6P3X3
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_2    TPR_repeat   
Domain families : Pfam (Sanger)TPR_2 (PF07719)   
Domain families : Pfam (NCBI)pfam07719   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC27
DMDM Disease mutations55622
Blocks (Seattle)TTC27
SuperfamilyQ6P3X3
Human Protein Atlas [tissue]ENSG00000018699-TTC27 [tissue]
Peptide AtlasQ6P3X3
HPRD08618
IPIIPI00183938   IPI00894206   IPI00893942   IPI00893524   IPI00893796   IPI00894096   
Protein Interaction databases
DIP (DOE-UCLA)Q6P3X3
IntAct (EBI)Q6P3X3
FunCoupENSG00000018699
BioGRIDTTC27
STRING (EMBL)TTC27
ZODIACTTC27
Ontologies - Pathways
QuickGOQ6P3X3
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkTTC27
Atlas of Cancer Signalling NetworkTTC27
Wikipedia pathwaysTTC27
Orthology - Evolution
OrthoDB55622
GeneTree (enSembl)ENSG00000018699
Phylogenetic Trees/Animal Genes : TreeFamTTC27
HOVERGENQ6P3X3
HOGENOMQ6P3X3
Homologs : HomoloGeneTTC27
Homology/Alignments : Family Browser (UCSC)TTC27
Gene fusions - Rearrangements
Fusion: TCGA_MDACCPPP3R1 TTC27
Fusion: TCGA_MDACCELMOD3 TTC27
Tumor Fusion PortalTTC27
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC27
dbVarTTC27
ClinVarTTC27
1000_GenomesTTC27 
Exome Variant ServerTTC27
ExAC (Exome Aggregation Consortium)ENSG00000018699
GNOMAD BrowserENSG00000018699
Genetic variants : HAPMAP55622
Genomic Variants (DGV)TTC27 [DGVbeta]
DECIPHERTTC27 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC27 
Mutations
ICGC Data PortalTTC27 
TCGA Data PortalTTC27 
Broad Tumor PortalTTC27
OASIS PortalTTC27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC27  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTTC27
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC27
DgiDB (Drug Gene Interaction Database)TTC27
DoCM (Curated mutations)TTC27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC27 (select a term)
intoGenTTC27
Cancer3DTTC27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTTC27
MedgenTTC27
Genetic Testing Registry TTC27
NextProtQ6P3X3 [Medical]
TSGene55622
GENETestsTTC27
Target ValidationTTC27
Huge Navigator TTC27 [HugePedia]
snp3D : Map Gene to Disease55622
BioCentury BCIQTTC27
ClinGenTTC27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55622
Chemical/Pharm GKB GenePA145007326
Clinical trialTTC27
Miscellaneous
canSAR (ICR)TTC27 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC27
EVEXTTC27
GoPubMedTTC27
iHOPTTC27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:06:44 CET 2017

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